Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu4174 and Atu4175 overlap by 4 nucleotidesAtu4175 and Atu4176 are separated by 395 nucleotidesAtu4176 and Atu4177 are separated by 364 nucleotidesAtu4177 and Atu4178 are separated by 69 nucleotides Atu4174: Atu4174 - peptide chain release factor 1, at 1,295,449 to 1,296,531 Atu4174 Atu4175: Atu4175 - protoporphyrinogen oxidase, at 1,296,528 to 1,297,397 Atu4175 Atu4176: Atu4176 - hypothetical protein, at 1,297,793 to 1,298,578 Atu4176 Atu4177: Atu4177 - ATP-dependent Clp protease, ATP-binding subunit, at 1,298,943 to 1,301,567 Atu4177 Atu4178: Atu4178 - hypothetical protein, at 1,301,637 to 1,303,583 Atu4178
Group Condition Atu4174 Atu4175 Atu4176 Atu4177 Atu4178
carbon source D-Saccharic potassium salt (C) N.D. N.D. -1.5 -0.1 N.D.
carbon source alpha-Lactose (C) N.D. N.D. -1.4 -0.1 N.D.
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct N.D. N.D. -1.0 -0.4 N.D.
in planta Plant=Sorghum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days N.D. N.D. -1.0 -0.4 N.D.
in planta Plant=Sorghum_X54_243; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct N.D. N.D. -0.8 -0.6 N.D.
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct N.D. N.D. -0.9 -0.4 N.D.
in planta Plant=Sorghum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days N.D. N.D. -0.9 -0.4 N.D.
carbon source alpha-Lactose (C) N.D. N.D. -1.3 -0.0 N.D.
carbon source Beta-Lactose (C) N.D. N.D. -1.2 -0.1 N.D.
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct N.D. N.D. -0.9 -0.4 N.D.
in planta Plant=Sorghum_Btx_430; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct N.D. N.D. -0.7 -0.5 N.D.
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct N.D. N.D. -0.6 -0.6 N.D.
in planta Plant=Sorghum_SS_20; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct N.D. N.D. -0.8 -0.3 N.D.
in planta Plant=Sorghum_SS_20; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct N.D. N.D. -1.0 -0.2 N.D.
in planta Plant=Sorghum_X50_665; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct N.D. N.D. -0.7 -0.5 N.D.
nitrogen source Choline chloride (N) N.D. N.D. -1.1 -0.0 N.D.
in planta Plant=Maize; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days N.D. N.D. -0.8 -0.4 N.D.
in planta Plant=Sorghum_NK_300; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct N.D. N.D. -0.8 -0.3 N.D.
carbon source Xylitol (C) N.D. N.D. -1.1 +0.0 N.D.
stress Timentin 6.25 ug/mL N.D. N.D. -1.2 +0.2 N.D.
stress Timentin 6.25 ug/mL N.D. N.D. -0.9 +0.4 N.D.
stress Streptomycin 200 ug/mL N.D. N.D. -1.1 +0.6 N.D.
stress Streptomycin 200 ug/mL N.D. N.D. -1.0 +0.5 N.D.
in planta Plant=Sorghum_SS_20; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct N.D. N.D. +0.8 -0.7 N.D.
stress R2A with Tetracycline 0.002 mM N.D. N.D. +1.0 -0.1 N.D.
stress Chloramphenicol 12.5 ug/mL N.D. N.D. +1.3 -0.3 N.D.
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD0.075 N.D. N.D. +0.8 +0.3 N.D.
stress R2A with tungstate 375 mM N.D. N.D. +1.0 +0.2 N.D.
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD2.0 N.D. N.D. +0.8 +0.5 N.D.
stress Chloramphenicol 12.5 ug/mL N.D. N.D. +1.7 -0.1 N.D.
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