Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu4157 and Atu4159 are separated by 175 nucleotidesAtu4159 and Atu4160 are separated by 67 nucleotidesAtu4160 and Atu4161 overlap by 1 nucleotidesAtu4161 and Atu4162 are separated by 137 nucleotides Atu4157: Atu4157 - bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase, at 1,274,540 to 1,278,226 Atu4157 Atu4159: Atu4159 - AsnC family transcriptional regulator, at 1,278,402 to 1,278,872 Atu4159 Atu4160: Atu4160 - RNA polymerase sigma factor, at 1,278,940 to 1,279,506 Atu4160 Atu4161: Atu4161 - hypothetical protein, at 1,279,506 to 1,279,712 Atu4161 Atu4162: Atu4162 - two-component response regulator, at 1,279,850 to 1,280,644 Atu4162
Group Condition Atu4157 Atu4159 Atu4160 Atu4161 Atu4162
nitrogen source L-Proline (N) -4.7 -4.7 -0.0 -1.1 -0.2
nitrogen source L-Proline (N) -4.9 -3.7 +0.0 +0.3 -0.2
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.4 -0.1 -0.9 -0.8 -1.8
in planta Plant=Wheat; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.3 -0.6 -1.6 -0.4 -1.1
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.3 -0.7 -0.1 -2.5 -0.3
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD2.0 -0.6 -0.7 -0.7 -0.5 -1.2
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.4 -0.1 -1.6 +0.2 -1.6
in planta Plant=Wheat; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.0 -1.0 -1.4 +0.1 -1.2
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -1.3 -0.8 -1.4 +0.7 -0.4
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.4 +0.4 -0.8 -0.1 -2.1
no phage P2L4 -0.6 -0.9 -0.8 +0.5 -0.9
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.2 +0.8 -2.2 +0.8 -1.9
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.3 +0.1 -1.0 +0.7 -1.7
phage AgroPhage_B01 +0.0 +0.9 +0.3 -3.0 -0.4
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.6 +0.1 -0.7 +0.7 -1.6
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.1 -0.1 -1.4 +0.8 -1.2
carbon source DL-glyceraldehyde (C) -0.0 +0.3 +0.0 -2.7 +0.8
no phage P4L4 -0.5 -0.4 -1.1 +1.1 -0.8
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -1.3 +0.2 -0.6 +1.1 -0.7
phage Phage 100.2 + bactiera -0.1 +0.1 +0.8 -2.4 +0.3
no phage P3L4 -0.6 -0.0 -0.5 +1.2 -1.3
phage AgroPhage_F04 +0.3 +1.0 +0.3 -2.5 -0.2
no phage P4L5 -0.3 +0.8 -0.9 +0.5 -1.0
phage AgroPhage_D10 -0.0 +0.4 +0.7 -2.3 +0.2
phage Phage 100.1 + bacteria -0.1 -0.3 +0.7 -1.8 +0.6
phage Phage 100.2 + bactiera -0.1 +0.3 +0.9 -2.1 +0.3
no phage P2L5 -0.2 +1.0 -1.4 +1.6 -1.3
carbon source D-Saccharic potassium salt (C) -0.0 -0.0 +1.1 -1.7 +1.4
stress R2A with m-arsenite 0.8 mM +1.1 +0.2 +1.4 +2.2 -1.2
stress R2A with m-arsenite 0.8 mM +1.1 +0.3 +1.2 +2.3 -0.8
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