Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu4150 and Atu4151 are separated by 33 nucleotidesAtu4151 and Atu4153 are separated by 212 nucleotidesAtu4153 and Atu4154 are separated by 229 nucleotidesAtu4154 and Atu4155 are separated by 20 nucleotides Atu4150: Atu4150 - hypothetical protein, at 1,268,112 to 1,268,999 Atu4150 Atu4151: Atu4151 - LysR family transcriptional regulator, at 1,269,033 to 1,269,935 Atu4151 Atu4153: Atu4153 - aldehyde dehydrogenase, at 1,270,148 to 1,271,677 Atu4153 Atu4154: Atu4154 - aliphatic sulfonate ABC transporter substrate-binding protein, at 1,271,907 to 1,272,860 Atu4154 Atu4155: Atu4155 - aliphatic sulfonate ABC transporter permease, at 1,272,881 to 1,273,663 Atu4155
Group Condition Atu4150 Atu4151 Atu4153 Atu4154 Atu4155
nitrogen source L-Pipecolic Acid (N) +0.0 -2.4 -2.6 -0.2 +0.2
nitrogen source L-Lysine (N) +0.1 -1.8 -2.6 -0.2 -0.1
nitrogen source L-Pipecolic Acid (N) +0.1 -1.7 -2.9 +0.0 -0.0
nitrogen source L-Lysine (N) -0.1 -2.0 -2.1 -0.1 -0.1
nitrogen source 2,6-diaminopimelic (N) +0.1 -0.4 -1.8 -0.1 +0.0
nitrogen source 2,6-diaminopimelic (N) +0.1 -0.6 -1.6 +0.1 -0.1
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.5 -0.3 -0.3 -0.7 -0.1
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.2 -0.4 -0.2 -0.5 -0.3
carbon source Maltitol (C) -0.1 -0.0 -0.3 -0.4 -0.7
in planta Plant=Sorghum_X50_665; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.3 -0.3 -0.3 -0.4 -0.2
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.0 -0.5 -0.9 +0.1 +0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.1 -0.6 -0.8 -0.3 +0.6
in planta Plant=Maize; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.2 -0.6 +0.0 -0.6 +0.2
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.5 -1.2 +0.1 +0.2 +0.4
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.2 +0.3 -0.1 +0.1 -1.0
phage AgroPhage_A07 +0.0 -0.6 -0.5 -0.3 +0.5
stress R2A with m-arsenite 0.8 mM +0.1 +0.1 -0.7 -0.4 +0.3
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.4 +0.3 -0.6 -0.0 +0.2
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.1 +0.4 -0.1 -0.1 -0.7
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +0.2 -0.3 -0.7 -0.1 +0.7
in planta Plant=Lettuce; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.3 +0.3 -0.6 +0.1 -0.2
carbon source Ribitol (C) +0.1 +0.2 -0.7 -0.2 +0.3
nitrogen source DL-2-Aminobutyric (N) +0.3 +0.3 -0.7 -0.2 +0.3
phage AgroPhage_C04 -0.1 -0.9 +0.3 +0.5 +0.2
in planta Plant=Sorghum_Btx_642; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.3 -0.4 -0.1 -0.3 +0.4
phage AgroPhage_C10 +0.1 -0.8 +0.4 +0.2 +0.2
phage phage 95.1 -0.2 +0.7 -0.3 +0.1 -0.2
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.1 +0.6 -0.9 +0.5 +0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.4 +0.6 -0.7 -0.3 +0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.1 +0.4 -0.3 +0.5 +0.2
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