Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu4126 and Atu4127 are separated by 1 nucleotidesAtu4127 and Atu4128 are separated by 74 nucleotidesAtu4128 and Atu4129 are separated by 13 nucleotidesAtu4129 and Atu4130 overlap by 4 nucleotides Atu4126: Atu4126 - branched chain amino acid ABC transporter permease, at 1,244,468 to 1,245,355 Atu4126 Atu4127: Atu4127 - branched chain amino acid ABC transporter permease, at 1,245,357 to 1,246,364 Atu4127 Atu4128: Atu4128 - GMC type oxidoreductase, at 1,246,439 to 1,248,034 Atu4128 Atu4129: Atu4129 - 3-hydroxyisobutyrate dehydrogenase, at 1,248,048 to 1,248,932 Atu4129 Atu4130: Atu4130 - acetoacetyl-CoA synthetase, at 1,248,929 to 1,250,884 Atu4130
Group Condition Atu4126 Atu4127 Atu4128 Atu4129 Atu4130
carbon source L-Sorbose (C) +0.1 +0.0 -3.7 -0.4 -0.1
carbon source L-Sorbose (C) +0.0 -0.0 -3.4 -0.1 -0.0
carbon source D-Saccharic potassium salt (C) +0.0 +0.1 -3.0 -0.2 +0.1
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.1 -0.2 -0.6 -1.3 -0.4
carbon source D-Saccharic potassium salt (C) +0.3 +0.5 -3.1 -0.3 +0.1
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.4 -0.5 +0.0 -1.1 -0.5
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.2 -0.3 -0.5 -0.7 -0.3
carbon source methyl-alpha-D-xylopyranoside (C) -0.1 -0.1 -1.2 -0.4 +0.0
carbon source NAG (C) -0.1 -0.1 -1.4 -0.1 +0.1
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.4 -0.1 -0.1 -0.9 -0.2
carbon source methyl-alpha-D-xylopyranoside (C) -0.1 -0.2 -0.9 -0.4 +0.0
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.2 -0.0 -0.4 -0.7 -0.3
carbon source NAG (C) -0.0 -0.1 -1.3 -0.0 -0.0
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.4 +0.0 -0.4 -0.4 -0.3
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.1 -0.6 -0.2 -0.5 -0.1
carbon source anthranilamide (C) -0.1 -0.2 -0.8 -0.4 -0.0
carbon source L-(+)-Erythrulose (C) -0.2 -0.1 -1.0 -0.2 +0.0
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.2 -0.3 -0.1 -0.9 -0.5
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.0 -1.1 -0.1 -0.1 +0.3
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.4 -0.2 -0.4 -0.5 -0.2
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.2 -0.4 -0.6 +0.5 +0.1
in planta Plant=Wheat; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.4 +0.4 -0.3 -0.3 +0.2
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.1 +0.6 -0.4 -0.5 -0.1
phage AgroPhage_E10 +0.4 -0.3 -0.4 -0.2 +0.5
carbon source L-Alanine (C) -0.0 -0.0 +1.2 -0.1 +0.3
carbon source L-Xylose (C) +0.0 +0.0 +1.4 -0.1 -0.0
carbon source L-Xylose (C) +0.0 +0.1 +1.5 -0.1 -0.1
stress R2A with molybdate 400 mM +0.1 +0.2 +0.6 +0.6 +0.1
stress R2A with Magnesium sulfate 400 mM +0.1 -0.1 +0.8 +0.9 -0.1
stress R2A with hypochlorite 6.25 mM +0.1 +0.2 +0.6 +1.0 -0.1
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