Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu4111 and Atu4112 are separated by 224 nucleotidesAtu4112 and Atu4113 are separated by 117 nucleotidesAtu4113 and Atu4114 are separated by 62 nucleotidesAtu4114 and Atu4115 overlap by 4 nucleotides Atu4111: Atu4111 - hypothetical protein, at 1,230,231 to 1,230,494 Atu4111 Atu4112: Atu4112 - proline dipeptidase, at 1,230,719 to 1,231,906 Atu4112 Atu4113: Atu4113 - dipeptide ABC transporter substrate-binding protein, at 1,232,024 to 1,233,628 Atu4113 Atu4114: Atu4114 - dipeptide ABC transporter permease, at 1,233,691 to 1,234,698 Atu4114 Atu4115: Atu4115 - dipeptide ABC transporter permease, at 1,234,695 to 1,235,609 Atu4115
Group Condition Atu4111 Atu4112 Atu4113 Atu4114 Atu4115
stress R2A with m-arsenite 0.8 mM N.D. -1.4 -1.3 -1.4 -1.8
stress R2A with m-arsenite 0.8 mM N.D. -1.4 -1.3 -1.7 -1.4
in planta Plant=Sorghum_Btx_430; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct N.D. -0.9 -0.6 -0.8 -0.3
lb_sorghum_leaf LB_sorghum_leaf N.D. -0.6 -0.8 -0.7 -0.5
stress R2A with molybdate 400 mM N.D. -0.6 -0.6 -0.7 -0.7
in planta Plant=Sorghum_Btx_430; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct N.D. -0.4 -0.7 -0.6 -0.8
lb_sorghum_leaf LB_sorghum_leaf N.D. -0.5 -0.4 -0.9 -0.5
in planta Plant=Sorghum_X50_665; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct N.D. -0.7 -0.5 -0.3 -0.7
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct N.D. -0.9 -0.1 -0.4 -0.7
in planta Plant=Sorghum_Btx_430; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct N.D. -0.3 -0.3 -0.6 -0.8
in planta Plant=Sorghum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=5days N.D. -0.7 -0.5 -0.4 -0.3
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct N.D. -0.4 +0.0 -1.1 -0.6
in planta Plant=Sorghum_NK_300; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct N.D. -0.5 -0.3 -0.3 -0.9
in planta Plant=Sorghum_NK_300; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct N.D. -0.3 -0.5 -0.6 -0.5
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct N.D. -0.1 -0.6 -0.9 -0.4
phage Phage 100.2 + bactiera N.D. -0.6 -0.5 -0.5 -0.4
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct N.D. -0.8 -0.2 -0.3 -0.5
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct N.D. -0.5 -0.6 -0.1 -0.7
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct N.D. -0.5 -0.2 -0.5 -0.6
lb_sorghum x50 665 LB_Sorghum X50 665 N.D. -0.5 -0.4 -0.6 -0.3
in planta Plant=Sorghum_X54_243; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct N.D. -0.3 -0.5 -0.2 -0.6
lb_sorghum nk 300 LB_Sorghum NK 300 N.D. -0.5 -0.4 -0.3 -0.4
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct N.D. -1.5 +0.1 -0.1 -0.1
in planta Plant=Sorghum_NK_300; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct N.D. -0.4 -0.1 -0.7 +0.5
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct N.D. +0.2 -0.7 -0.7 +1.2
nophagecontrol No phage control N.D. +0.7 +0.5 +0.2 -0.4
phage AgroPhage_F03 N.D. +0.2 +0.3 +0.8 +0.6
carbon source D-Saccharic potassium salt (C) N.D. +0.4 +0.6 +0.7 +0.7
nitrogen source 3-aminobutyric (N) N.D. +0.7 +0.5 +0.7 +0.7
nitrogen source 3-aminobutyric (N) N.D. +0.8 +0.5 +0.8 +0.8
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