Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu4109 and Atu4110 are separated by 13 nucleotidesAtu4110 and Atu4111 are separated by 54 nucleotidesAtu4111 and Atu4112 are separated by 224 nucleotidesAtu4112 and Atu4113 are separated by 117 nucleotides Atu4109: Atu4109 - hypothetical protein, at 1,228,724 to 1,229,413 Atu4109 Atu4110: Atu4110 - serine dehydrogenase, at 1,229,427 to 1,230,176 Atu4110 Atu4111: Atu4111 - hypothetical protein, at 1,230,231 to 1,230,494 Atu4111 Atu4112: Atu4112 - proline dipeptidase, at 1,230,719 to 1,231,906 Atu4112 Atu4113: Atu4113 - dipeptide ABC transporter substrate-binding protein, at 1,232,024 to 1,233,628 Atu4113
Group Condition Atu4109 Atu4110 Atu4111 Atu4112 Atu4113
carbon source DL-glyceraldehyde (C) -1.2 -4.4 N.D. +0.2 +0.2
carbon source DL-glyceraldehyde (C) -0.4 -4.3 N.D. +0.1 -0.0
stress R2A with m-arsenite 0.8 mM -0.0 -0.2 N.D. -1.5 -1.4
stress R2A with m-arsenite 0.8 mM +0.0 -0.0 N.D. -1.4 -1.3
stress Chloramphenicol 12.5 ug/mL -0.1 +0.1 N.D. -1.4 -1.4
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.2 -0.3 N.D. -1.5 +0.1
stress Chloramphenicol 12.5 ug/mL +0.3 -0.0 N.D. -1.1 -0.9
lb_sorghum_leaf LB_sorghum_leaf -0.1 -0.1 N.D. -0.6 -0.8
in planta Plant=Sorghum_Btx_430; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.4 +0.1 N.D. -0.4 -0.7
in planta Plant=Lettuce; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days -0.7 -0.2 N.D. -0.4 -0.1
in planta Plant=Sorghum_Btx_430; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.2 -0.0 N.D. -0.9 -0.6
in planta Plant=Sorghum_SS_20; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.1 -0.4 N.D. -0.6 -0.2
stress R2A with tungstate 375 mM +0.3 -0.1 N.D. -0.5 -1.1
in planta Plant=Sorghum_X54_243; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.5 -0.1 N.D. -0.4 -0.3
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.2 -0.4 N.D. -0.5 -0.6
in planta Plant=Sorghum_Btx_642; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.5 +0.2 N.D. -0.7 -0.3
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.4 +0.3 N.D. -0.8 -0.2
in planta Plant=Sorghum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=5days +0.3 -0.2 N.D. -0.7 -0.5
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.2 +0.2 N.D. -0.3 -0.7
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.3 +0.3 N.D. -0.9 -0.1
stress R2A with molybdate 400 mM +0.3 -0.1 N.D. -0.6 -0.6
in planta Plant=Sorghum_Btx_642; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.6 -0.4 N.D. -0.5 -0.5
nitrogen source DL-2-Aminobutyric (N) -0.1 +0.3 N.D. -0.7 -0.3
in planta Plant=Sorghum_X54_243; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.4 -0.3 N.D. -0.3 -0.5
in planta Plant=Maize; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.2 +0.3 N.D. -0.4 -0.5
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.6 -0.2 N.D. +0.2 -0.7
nophagecontrol No phage control -0.4 -0.1 N.D. +0.7 +0.5
nitrogen source 3-aminobutyric (N) -0.3 -0.1 N.D. +0.7 +0.5
stress Streptomycin 200 ug/mL +0.1 -0.1 N.D. +0.5 +0.5
nitrogen source 3-aminobutyric (N) -0.1 +0.1 N.D. +0.8 +0.5
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