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Cofit
Protein
Homologs
Fitness for 5 genes in
Agrobacterium fabrum C58
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Atu4097 and Atu4098 overlap by 4 nucleotides
Atu4098 and Atu4099 are separated by 3 nucleotides
Atu4099 and Atu4100 are separated by 92 nucleotides
Atu4100 and Atu4101 are separated by 72 nucleotides
Atu4097: Atu4097 - L-aspartate oxidase, at 1,216,368 to 1,217,936
Atu4097
Atu4098: Atu4098 - quinolinate synthetase, at 1,217,933 to 1,218,970
Atu4098
Atu4099: Atu4099 - hypothetical protein, at 1,218,974 to 1,219,876
Atu4099
Atu4100: Atu4100 - hypothetical protein, at 1,219,969 to 1,220,457
Atu4100
Atu4101: Atu4101 - hypothetical protein, at 1,220,530 to 1,221,033
Atu4101
Group
Condition
Atu4097
Atu4098
Atu4099
Atu4100
Atu4101
carbon source
D-Glucuronic gamma lactone (C)
-4.4
-5.1
-0.4
-0.1
+0.2
carbon source
m-Inositol (C)
-4.2
-5.7
+0.0
+0.2
+0.1
carbon source
m-Inositol (C)
-4.3
-5.3
+0.0
+0.1
+0.1
carbon source
D-Glucuronic gamma lactone (C)
-4.2
-4.6
-0.1
+0.1
-0.3
carbon source
D-Quinic (C)
-4.0
-4.3
-0.3
+0.2
-0.3
carbon source
D-Galacturonic Acid (C)
-4.0
-4.7
+0.1
+0.1
+0.1
carbon source
D-Quinic (C)
-3.7
-4.4
-0.3
+0.2
-0.0
carbon source
Protocatechuic Acid (C)
-3.2
-4.4
-0.4
+0.0
-0.1
carbon source
Ribitol (C)
-3.5
-3.8
-0.3
+0.1
-0.3
carbon source
D-Galacturonic Acid (C)
-3.4
-4.4
+0.1
+0.1
+0.1
carbon source
Ribitol (C)
-3.4
-3.9
-0.1
+0.1
+0.2
carbon source
succinate (C)
-3.0
-3.7
-0.3
-0.0
+0.0
carbon source
D-Mannitol (C)
-2.9
-3.4
-0.4
+0.0
+0.1
carbon source
D-Raffinose (C)
-3.0
-3.7
+0.1
+0.1
-0.0
carbon source
Protocatechuic Acid (C)
-2.9
-3.7
-0.1
+0.1
+0.2
carbon source
D-Raffinose (C)
-3.0
-3.5
+0.1
+0.0
+0.0
carbon source
D-Trehalose (C)
-3.3
-3.2
-0.2
+0.2
+0.1
carbon source
D-Mannitol (C)
-2.7
-3.2
-0.3
+0.0
-0.0
carbon source
D-Maltose (C)
-2.8
-3.4
-0.2
+0.2
+0.0
carbon source
methyl-beta-L-arabinopyranoside (C)
-2.7
-3.2
-0.2
+0.1
+0.1
carbon source
Cellotetraose (C)
-2.7
-3.6
+0.0
-0.0
+0.3
carbon source
L-Fucose (C)
-2.8
-3.3
+0.0
+0.1
+0.2
carbon source
Sucrose (C)
-2.7
-3.2
-0.2
+0.2
+0.2
carbon source
L-Arabinose (C)
-2.9
-3.2
+0.5
-0.1
+0.1
carbon source
Stachyose (C)
-2.7
-3.2
+0.2
+0.2
-0.1
carbon source
L-Fucose (C)
-2.6
-3.4
+0.3
+0.1
+0.1
carbon source
Stachyose (C)
-3.0
-2.7
+0.3
+0.2
-0.1
carbon source
D-Galactose (C)
-2.7
-2.9
-0.2
+0.2
+0.3
carbon source
L-Arabinose (C)
-2.9
-3.0
+0.7
+0.1
-0.2
carbon source
D-Arabinose (C)
-2.2
-2.6
+1.2
+0.3
-0.2
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