Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu4081 and Atu4082 are separated by 167 nucleotidesAtu4082 and Atu4083 are separated by 18 nucleotidesAtu4083 and Atu4085 are separated by 138 nucleotidesAtu4085 and Atu4086 are separated by 87 nucleotides Atu4081: Atu4081 - aspartate racemase, at 1,201,574 to 1,202,287 Atu4081 Atu4082: Atu4082 - AsnC family transcriptional regulator, at 1,202,455 to 1,202,916 Atu4082 Atu4083: Atu4083 - aldose epimerase, at 1,202,935 to 1,203,918 Atu4083 Atu4085: Atu4085 - 2-hydroxy-3-oxopropionate reductase, at 1,204,057 to 1,204,950 Atu4085 Atu4086: Atu4086 - gluconate 5-dehydrogenase, at 1,205,038 to 1,205,793 Atu4086
Group Condition Atu4081 Atu4082 Atu4083 Atu4085 Atu4086
carbon source L-ascorbate (C) +0.3 +0.3 +0.2 -5.5 -6.4
nitrogen source L-Cysteine (N) -4.7 -4.4 -0.0 +0.0 +0.2
nitrogen source L-Cysteine (N) -4.0 -3.8 +0.1 +0.1 +0.1
carbon source L-ascorbate (C) +0.2 +0.1 +0.4 -2.1 -4.6
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.1 -0.2 -0.5 -0.8 -0.6
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.1 -0.1 -0.8 -0.8 -0.4
phage AgroPhage_C04 -0.5 -0.7 -0.7 +0.3 -0.2
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.5 -0.5 -0.4 +0.0 -0.1
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.1 -0.8 -0.3 -0.3 +0.0
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.2 -0.3 -0.5 -0.2 -0.3
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.1 -0.3 -0.1 -0.6 -0.2
lb_sorghum_leaf LB_sorghum_leaf -0.2 -0.6 -0.2 -0.3 -0.1
stress R2A with m-arsenite 0.8 mM +0.2 -0.3 -1.2 -0.0 +0.0
carbon source L-Sorbose (C) +0.1 +0.0 -1.3 -0.1 -0.0
carbon source L-Sorbose (C) +0.1 -0.0 -1.3 -0.0 -0.0
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.8 -0.2 -0.4 +0.3 -0.2
phage AgroPhage_D10 -0.2 +0.2 -0.2 -0.3 -0.8
in planta Plant=Maize; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.3 -0.2 +0.2 -0.7 -0.2
stress R2A with m-arsenite 0.8 mM +0.3 +0.0 -1.1 -0.2 -0.2
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.2 -0.3 -0.1 -0.4 -0.6
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days +0.3 -0.3 -0.1 -0.5 -0.4
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.3 -0.1 -0.2 -0.4 -0.4
phage AgroPhage_E10 -0.0 -0.5 -0.3 -0.4 +0.5
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.2 -0.4 -0.0 -0.6 +0.5
in planta Plant=Maize; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.4 +0.2 -0.4 -0.6 +0.3
in planta Plant=Sorghum_SS_20; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.2 -0.4 +0.5 +0.2 -0.2
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.0 -0.3 +0.4 -0.2 +0.5
phage phage 100.2 +0.2 +0.3 +0.6 +0.3 +0.3
in planta Plant=Sorghum_X50_665; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.4 +0.8 +0.1 +0.2 +0.6
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.9 +0.4 +0.3 +0.3 +0.3
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