Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu4074 and Atu4075 are separated by 4 nucleotidesAtu4075 and Atu4076 are separated by 5 nucleotidesAtu4076 and Atu4077 are separated by 21 nucleotidesAtu4077 and Atu4078 overlap by 1 nucleotides Atu4074: Atu4074 - phosphoglucomutase, at 1,191,284 to 1,192,912 Atu4074 Atu4075: Atu4075 - glycogen synthase, at 1,192,917 to 1,194,359 Atu4075 Atu4076: Atu4076 - glucose-1-phosphate adenylyltransferase, at 1,194,365 to 1,195,627 Atu4076 Atu4077: Atu4077 - glycogen branching protein, at 1,195,649 to 1,197,856 Atu4077 Atu4078: Atu4078 - glycogen phosphorylase, at 1,197,856 to 1,200,318 Atu4078
Group Condition Atu4074 Atu4075 Atu4076 Atu4077 Atu4078
carbon source Cellotetraose (C) N.D. -5.1 -0.1 -0.6 -0.5
carbon source Cellohexaose (C) N.D. -4.9 -0.0 -0.7 -0.7
carbon source Cellotetraose (C) N.D. -5.1 -0.1 -0.4 -0.6
carbon source Gentibiose (C) N.D. -4.5 -0.4 -0.5 -0.7
carbon source Gentibiose (C) N.D. -3.8 -0.2 -0.6 -0.7
carbon source Cellohexaose (C) N.D. -3.6 -0.2 -0.7 -0.7
carbon source Cellopentaose (C) N.D. -3.8 -0.1 -0.7 -0.5
carbon source D-Trehalose (C) N.D. -4.4 +0.0 -0.5 -0.2
carbon source D-Trehalose (C) N.D. -4.3 +0.2 -0.6 -0.1
carbon source Cellopentaose (C) N.D. -3.3 -0.1 -0.5 -0.7
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct N.D. -0.8 -0.3 -2.5 -0.9
carbon source D-Mannitol (C) N.D. -3.3 -0.1 -0.5 -0.4
carbon source D-Trehalose (C) N.D. -3.6 +0.1 -0.5 -0.1
carbon source D-Cellobiose (C) N.D. -3.9 +0.0 +0.1 -0.2
carbon source D-Trehalose (C) N.D. -3.6 +0.2 -0.5 -0.1
carbon source Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C) N.D. -3.5 -0.0 -0.4 -0.0
carbon source D-Cellobiose (C) N.D. -3.8 -0.0 +0.1 -0.1
carbon source D-Maltose (C) N.D. -4.0 +0.1 -0.0 +0.2
carbon source D-Mannitol (C) N.D. -2.9 -0.1 -0.5 -0.3
carbon source D-Glucose (C) N.D. -3.1 -0.0 -0.5 -0.2
carbon source Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C) N.D. -3.3 +0.1 -0.3 +0.0
carbon source Methyl beta-D-glucopyranoside (C) N.D. -3.1 +0.1 -0.5 -0.1
carbon source D-Glucose (C) N.D. -2.8 -0.0 -0.5 -0.1
carbon source D-Maltose (C) N.D. -3.6 +0.2 +0.0 +0.2
carbon source L-ascorbate (C) N.D. -0.0 +0.8 -2.8 -0.4
carbon source L-ascorbate (C) N.D. +0.2 +0.7 -2.8 -0.1
stress Erythromycin 12.5 ug/mL N.D. +0.7 +0.0 +2.0 +1.3
stress Erythromycin 12.5 ug/mL N.D. +0.7 +0.0 +2.4 +1.5
stress R2A with m-arsenite 0.8 mM N.D. -1.1 -0.4 +5.4 +1.9
stress R2A with m-arsenite 0.8 mM N.D. -1.5 -0.3 +5.5 +2.3
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