Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu4072 and Atu4073 are separated by 54 nucleotidesAtu4073 and Atu4074 are separated by 104 nucleotidesAtu4074 and Atu4075 are separated by 4 nucleotidesAtu4075 and Atu4076 are separated by 5 nucleotides Atu4072: Atu4072 - nodulation protein N, at 1,188,681 to 1,189,169 Atu4072 Atu4073: Atu4073 - glycogen debranching protein, at 1,189,224 to 1,191,179 Atu4073 Atu4074: Atu4074 - phosphoglucomutase, at 1,191,284 to 1,192,912 Atu4074 Atu4075: Atu4075 - glycogen synthase, at 1,192,917 to 1,194,359 Atu4075 Atu4076: Atu4076 - glucose-1-phosphate adenylyltransferase, at 1,194,365 to 1,195,627 Atu4076
Group Condition Atu4072 Atu4073 Atu4074 Atu4075 Atu4076
stress R2A with Vancomycin 0.009 mM -4.5 +0.0 N.D. -3.0 -0.2
carbon source Cellotetraose (C) -0.9 -0.0 N.D. -5.1 -0.1
carbon source Cellotetraose (C) -0.5 -0.1 N.D. -5.1 -0.1
carbon source D-Trehalose (C) -1.2 +0.0 N.D. -4.4 +0.0
stress Dodecyl Sulfate 0.2 mM -5.7 -0.2 N.D. +0.1 +0.2
stress methyl jasmonate 5 mM -5.6 -0.4 N.D. +0.3 +0.2
stress Dodecyl Sulfate 0.2 mM -5.7 -0.0 N.D. +0.4 +0.1
stress Nerol 1.25 mM -5.5 +0.0 N.D. +0.1 +0.1
carbon source Cellohexaose (C) -0.4 +0.1 N.D. -4.9 -0.0
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -3.6 -0.4 N.D. -0.9 -0.2
carbon source L-ascorbate (C) -5.6 -0.4 N.D. +0.2 +0.7
in planta Plant=Sorghum_X54_243; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -3.6 -0.1 N.D. -0.8 -0.3
carbon source Gentibiose (C) +0.1 +0.0 N.D. -4.5 -0.4
carbon source Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C) -1.4 +0.1 N.D. -3.3 +0.1
in planta Plant=Lettuce; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days -4.2 +0.1 N.D. -0.4 -0.1
carbon source Cellohexaose (C) -0.5 -0.2 N.D. -3.6 -0.2
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -3.3 -0.1 N.D. -0.6 -0.4
carbon source Cellopentaose (C) -0.4 -0.1 N.D. -3.8 -0.1
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -3.3 +0.0 N.D. -0.8 -0.3
carbon source D-Maltose (C) -0.4 -0.1 N.D. -4.0 +0.1
stress R2A with Vancomycin 0.009 mM -2.7 +0.2 N.D. -2.0 +0.2
carbon source D-Trehalose (C) -0.2 +0.0 N.D. -4.3 +0.2
in planta Plant=Tomato; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -4.2 +0.0 N.D. -0.3 +0.2
in planta Plant=Lettuce; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -4.2 -0.1 N.D. -0.1 +0.2
stress methyl jasmonate 5 mM -4.2 -0.3 N.D. +0.3 +0.1
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -3.4 +0.2 N.D. -0.3 -0.6
in planta Plant=Sorghum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -3.9 -0.0 N.D. +0.2 -0.3
nophagecontrol No phage control -4.4 +0.1 N.D. +0.0 +0.3
Atjh2 -4.2 -0.0 N.D. +0.3 +0.3
benthi_leaf_lb with c58c1od0.075 Benthi_leaf_C58C1OD0.075 -3.9 +0.3 N.D. +0.2 +0.1
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