Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu4069 and Atu4070 overlap by 8 nucleotidesAtu4070 and Atu4071 overlap by 4 nucleotidesAtu4071 and Atu4072 are separated by 22 nucleotidesAtu4072 and Atu4073 are separated by 54 nucleotides Atu4069: Atu4069 - sarcosine oxidase alpha subunit, at 1,184,114 to 1,187,074 Atu4069 Atu4070: Atu4070 - sarcosine oxidase gamma subunit, at 1,187,067 to 1,187,621 Atu4070 Atu4071: Atu4071 - hypothetical protein, at 1,187,618 to 1,188,658 Atu4071 Atu4072: Atu4072 - nodulation protein N, at 1,188,681 to 1,189,169 Atu4072 Atu4073: Atu4073 - glycogen debranching protein, at 1,189,224 to 1,191,179 Atu4073
Group Condition Atu4069 Atu4070 Atu4071 Atu4072 Atu4073
stress Dodecyl Sulfate 0.2 mM +0.1 -0.1 -0.2 -5.7 -0.2
stress methyl jasmonate 5 mM +0.1 -0.1 +0.0 -5.6 -0.4
stress Dodecyl Sulfate 0.2 mM +0.0 -0.0 -0.1 -5.7 -0.0
carbon source L-ascorbate (C) +0.1 +0.1 +0.1 -5.6 -0.4
stress Nerol 1.25 mM +0.0 -0.2 +0.0 -5.5 +0.0
stress R2A with Vancomycin 0.009 mM -0.1 +0.1 -0.3 -4.5 +0.0
Atjh2 -0.1 -0.4 +0.1 -4.2 -0.0
stress methyl jasmonate 5 mM +0.0 -0.1 +0.1 -4.2 -0.3
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.0 -0.2 -0.3 -3.6 -0.4
in planta Plant=Tomato; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.0 -0.2 +0.1 -4.2 +0.0
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.2 -0.2 -0.4 -3.4 +0.0
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.3 -0.0 -0.6 -3.3 +0.0
in planta Plant=Lettuce; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.0 -0.1 +0.2 -4.2 -0.1
stress Nerol 1.25 mM -0.1 -0.2 +0.1 -3.9 -0.1
in planta Plant=Lettuce; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days -0.1 +0.2 -0.2 -4.2 +0.1
in planta Plant=Sorghum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.0 +0.1 -0.2 -3.9 -0.0
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.3 -0.2 +0.1 -3.0 -0.6
in planta Plant=Sorghum_X54_243; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.3 +0.3 -0.3 -3.6 -0.1
stress R2A with Calcium Chloride Dihydrate 87.5 mM -0.1 -0.2 -0.1 -3.5 -0.0
in planta Plant=Sorghum_NK_300; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.0 +0.1 -0.0 -3.7 -0.0
nophagecontrol No phage control +0.1 +0.2 +0.4 -4.4 +0.1
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.0 -0.6 +0.0 -3.1 +0.1
in planta Plant=Sorghum_NK_300; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.0 -0.1 +0.1 -3.5 +0.1
benthi_leaf_lb with c58c1od0.075 Benthi_leaf_C58C1OD0.075 +0.2 -0.0 +0.0 -3.9 +0.3
Atjh14 -0.1 -0.8 -0.3 -2.3 +0.3
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.2 -0.1 -0.1 -3.4 +0.2
phage AgroPhage_D10 +0.1 +0.1 +0.3 -3.5 -0.1
in planta Plant=Sorghum_SS_20; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.1 +0.3 -0.3 -3.5 +0.6
no phage P5L5 +0.2 +0.2 +0.0 -3.3 -0.1
no phage P2L5 +0.3 +0.3 -0.3 -3.1 -0.1
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