Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu4068 and Atu4069 overlap by 4 nucleotidesAtu4069 and Atu4070 overlap by 8 nucleotidesAtu4070 and Atu4071 overlap by 4 nucleotidesAtu4071 and Atu4072 are separated by 22 nucleotides Atu4068: Atu4068 - sarcosine oxidase delta subunit, at 1,183,803 to 1,184,117 Atu4068 Atu4069: Atu4069 - sarcosine oxidase alpha subunit, at 1,184,114 to 1,187,074 Atu4069 Atu4070: Atu4070 - sarcosine oxidase gamma subunit, at 1,187,067 to 1,187,621 Atu4070 Atu4071: Atu4071 - hypothetical protein, at 1,187,618 to 1,188,658 Atu4071 Atu4072: Atu4072 - nodulation protein N, at 1,188,681 to 1,189,169 Atu4072
Group Condition Atu4068 Atu4069 Atu4070 Atu4071 Atu4072
stress Dodecyl Sulfate 0.2 mM -0.4 +0.1 -0.1 -0.2 -5.7
stress Dodecyl Sulfate 0.2 mM -0.2 +0.1 +0.0 -0.1 -5.7
stress methyl jasmonate 5 mM -0.2 +0.1 -0.1 +0.0 -5.6
stress Nerol 1.25 mM -0.1 +0.0 -0.2 +0.0 -5.5
carbon source L-ascorbate (C) +0.1 +0.1 +0.1 +0.1 -5.6
stress R2A with Vancomycin 0.009 mM -0.3 -0.1 +0.1 -0.3 -4.5
in planta Plant=Sorghum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.9 +0.0 +0.1 -0.2 -3.9
nophagecontrol No phage control -1.1 +0.1 +0.2 +0.4 -4.4
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.5 -0.3 -0.0 -0.6 -3.3
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.4 -0.2 -0.2 -0.4 -3.4
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -1.2 -0.3 -0.2 +0.1 -3.0
in planta Plant=Sorghum_SS_20; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.9 -0.1 +0.3 -0.3 -3.5
stress methyl jasmonate 5 mM -0.2 +0.0 -0.1 +0.1 -4.2
stress Nerol 1.25 mM -0.3 -0.1 -0.2 +0.1 -3.9
in planta Plant=Tomato; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.0 -0.0 -0.2 +0.1 -4.2
stress R2A with Calcium Chloride Dihydrate 87.5 mM -0.6 -0.1 -0.2 -0.1 -3.5
in planta Plant=Lettuce; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days -0.1 -0.1 +0.2 -0.2 -4.2
in planta Plant=Lettuce; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.1 +0.0 -0.1 +0.2 -4.2
stress R2A with Vancomycin 0.009 mM -1.4 -0.0 -0.0 +0.3 -2.7
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.6 -0.1 -0.6 +0.2 -2.8
in planta Plant=Sorghum_X54_243; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.1 -0.3 +0.3 -0.3 -3.6
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.2 +0.0 -0.2 -0.3 -3.6
benthi_leaf_lb with c58c1od0.075 Benthi_leaf_C58C1OD0.075 -0.1 +0.2 -0.0 +0.0 -3.9
in planta Plant=Arabidopsis_efr; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.6 -0.1 +0.2 -0.3 -3.0
no phage P2L5 -0.7 +0.3 +0.2 -0.3 -3.1
no phage P4L5 -0.9 -0.0 +0.5 -0.1 -3.0
no phage P5L5 -0.7 +0.2 +0.2 +0.0 -3.3
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.7 -0.0 -0.6 +0.0 -3.1
no phage P3L4 -1.4 +0.2 +0.6 +0.1 -1.9
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.3 +0.2 +0.1 +0.2 +3.7
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