Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu4066 and Atu4067 are separated by 14 nucleotidesAtu4067 and Atu4068 are separated by 11 nucleotidesAtu4068 and Atu4069 overlap by 4 nucleotidesAtu4069 and Atu4070 overlap by 8 nucleotides Atu4066: Atu4066 - sarcosine oxidase beta subunit, at 1,182,128 to 1,183,381 Atu4066 Atu4067: Atu4067 - hypothetical protein, at 1,183,396 to 1,183,791 Atu4067 Atu4068: Atu4068 - sarcosine oxidase delta subunit, at 1,183,803 to 1,184,117 Atu4068 Atu4069: Atu4069 - sarcosine oxidase alpha subunit, at 1,184,114 to 1,187,074 Atu4069 Atu4070: Atu4070 - sarcosine oxidase gamma subunit, at 1,187,067 to 1,187,621 Atu4070
Group Condition Atu4066 Atu4067 Atu4068 Atu4069 Atu4070
stress R2A with Vancomycin 0.009 mM -0.5 -0.2 -1.4 -0.0 -0.0
Atjh14 +0.1 -0.9 -0.2 -0.1 -0.8
in planta Plant=Sorghum_X50_665; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.3 -0.4 -1.2 -0.0 -0.5
in planta Plant=Wheat; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.2 -0.3 -1.0 +0.0 -0.4
phage Phage 100.1 + bacteria -0.0 -0.5 -0.8 -0.2 -0.3
in planta Plant=Sorghum_SS_20; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.0 +0.8 -1.3 -0.1 -1.0
in planta Plant=Sorghum_Btx_430; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.0 -0.3 -1.3 -0.0 +0.1
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.1 +0.3 -1.2 -0.3 -0.2
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.2 -0.2 -0.9 -0.2 -0.3
nitrogen source DL-2-Aminobutyric (N) -0.2 -0.8 -0.6 +0.1 +0.2
phage AgroPhage_C10 +0.1 -0.8 -0.5 -0.0 +0.3
phage AgroPhage_C04 -0.3 +0.5 -0.7 +0.1 -0.5
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.1 +0.5 -0.6 -0.1 -0.6
no phage P3L4 +0.1 -0.2 -1.4 +0.2 +0.6
in planta Plant=Sorghum_SS_20; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.1 +0.2 -0.9 -0.1 +0.3
phage phage 100.3 +0.1 -0.0 -1.3 +0.0 +0.7
nophagecontrol No phage control +0.1 +0.4 -1.1 +0.1 +0.2
in planta Plant=Sorghum_Btx_642; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.3 +0.8 -1.0 +0.1 -0.3
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.1 -0.7 +0.8 -0.1 +0.2
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.4 -0.4 +0.7 -0.0 -0.6
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.1 +0.6 -0.9 -0.1 +0.5
stress Chloramphenicol 12.5 ug/mL -0.1 -0.6 -0.1 +0.3 +0.7
no phage P2L5 +0.5 +0.4 -0.7 +0.3 +0.3
in planta Plant=Sorghum_X50_665; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.1 -0.4 +0.8 +0.1 +0.4
phage AgroPhage_E10 -0.1 +0.7 +0.8 -0.2 +0.1
stress R2A with Magnesium sulfate 400 mM +0.2 -0.2 +0.9 +0.1 +0.5
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.0 +0.5 +0.5 -0.1 +0.6
lb_tobacco_leaf LB_Tobacco_Leaf +0.2 +0.4 +0.6 -0.1 +0.5
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.1 +1.2 +0.1 +0.1 +0.6
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.1 -0.2 +2.2 +0.1 +0.1
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