Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu4065 and Atu4066 are separated by 96 nucleotidesAtu4066 and Atu4067 are separated by 14 nucleotidesAtu4067 and Atu4068 are separated by 11 nucleotidesAtu4068 and Atu4069 overlap by 4 nucleotides Atu4065: Atu4065 - hypothetical protein, at 1,181,813 to 1,182,031 Atu4065 Atu4066: Atu4066 - sarcosine oxidase beta subunit, at 1,182,128 to 1,183,381 Atu4066 Atu4067: Atu4067 - hypothetical protein, at 1,183,396 to 1,183,791 Atu4067 Atu4068: Atu4068 - sarcosine oxidase delta subunit, at 1,183,803 to 1,184,117 Atu4068 Atu4069: Atu4069 - sarcosine oxidase alpha subunit, at 1,184,114 to 1,187,074 Atu4069
Group Condition Atu4065 Atu4066 Atu4067 Atu4068 Atu4069
stress R2A with Vancomycin 0.009 mM N.D. -0.5 -0.2 -1.4 -0.0
in planta Plant=Sorghum_Btx_430; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct N.D. -0.0 -0.3 -1.3 -0.0
in planta Plant=Lettuce; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days N.D. -0.0 -0.6 -0.7 -0.2
nitrogen source DL-2-Aminobutyric (N) N.D. -0.2 -0.8 -0.6 +0.1
phage Phage 100.1 + bacteria N.D. -0.0 -0.5 -0.8 -0.2
in planta Plant=Wheat; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days N.D. -0.2 -0.3 -1.0 +0.0
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct N.D. -0.1 +0.3 -1.2 -0.3
in planta Plant=Sorghum_X50_665; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct N.D. +0.3 -0.4 -1.2 -0.0
stress Hygromycin B 12.5 ug/mL N.D. -0.2 -0.4 -0.7 +0.0
no phage P3L4 N.D. +0.1 -0.2 -1.4 +0.2
phage AgroPhage_C10 N.D. +0.1 -0.8 -0.5 -0.0
phage phage 100.3 N.D. +0.1 -0.0 -1.3 +0.0
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct N.D. +0.2 -0.2 -0.9 -0.2
in planta Plant=Sorghum_SS_20; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct N.D. -0.1 +0.2 -0.9 -0.1
phage AgroPhage_F04 N.D. -0.1 +0.2 -0.9 +0.2
in planta Plant=Sorghum_SS_20; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct N.D. +0.0 +0.8 -1.3 -0.1
nophagecontrol No phage control N.D. +0.1 +0.4 -1.1 +0.1
phage AgroPhage_C04 N.D. -0.3 +0.5 -0.7 +0.1
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct N.D. +0.1 +0.6 -0.9 -0.1
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days N.D. -0.1 -0.7 +0.8 -0.1
stress Chloramphenicol 12.5 ug/mL N.D. -0.3 -0.2 +0.7 -0.2
in planta Plant=Sorghum_Btx_642; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct N.D. +0.3 +0.8 -1.0 +0.1
no phage P2L5 N.D. +0.5 +0.4 -0.7 +0.3
in planta Plant=Sorghum_X50_665; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct N.D. +0.1 -0.4 +0.8 +0.1
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct N.D. +0.4 -0.4 +0.7 -0.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. +0.1 -0.1 +1.2 -0.0
phage AgroPhage_E10 N.D. -0.1 +0.7 +0.8 -0.2
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days N.D. +0.0 +0.4 +0.8 +0.1
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct N.D. +0.1 +1.2 +0.1 +0.1
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. +0.1 -0.2 +2.2 +0.1
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