Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu4046 and Atu4047 are separated by 363 nucleotidesAtu4047 and Atu4048 are separated by 24 nucleotidesAtu4048 and Atu4049 are separated by 124 nucleotidesAtu4049 and Atu4050 are separated by 62 nucleotides Atu4046: Atu4046 - glycine betaine ABC transporter substrate-binding protein, at 1,159,339 to 1,160,337 Atu4046 Atu4047: Atu4047 - two component sensor kinase/response regulator hybrid, at 1,160,701 to 1,163,676 Atu4047 Atu4048: Atu4048 - 2-hydroxyacid dehydrogenase, at 1,163,701 to 1,164,645 Atu4048 Atu4049: Atu4049 - exopolysaccharide polymerization/transport protein, at 1,164,770 to 1,167,163 Atu4049 Atu4050: Atu4050 - UTP-glucose-1-phosphate uridylyltransferase, at 1,167,226 to 1,168,131 Atu4050
Group Condition Atu4046 Atu4047 Atu4048 Atu4049 Atu4050
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.3 -0.0 +0.0 N.D. -2.4
in planta Plant=Maize; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.2 -0.0 -0.4 N.D. -1.0
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD2.0 +0.0 -0.0 +0.0 N.D. -1.3
in planta Plant=Wheat; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.1 -0.1 +0.2 N.D. -1.4
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD0.075 +0.0 +0.1 +0.0 N.D. -1.4
stress methyl jasmonate 5 mM -0.2 +0.1 -0.0 N.D. -1.0
in planta Plant=Lettuce; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.2 +0.1 -0.1 N.D. -1.0
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.1 -0.2 +0.1 N.D. -1.2
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD0.075 +0.0 +0.0 +0.1 N.D. -1.2
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.2 -0.1 +0.4 N.D. -1.5
in planta Plant=Sorghum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.1 +0.1 +0.0 N.D. -1.2
phage AgroPhage_C04 +0.2 +0.3 -0.3 N.D. -1.1
in planta Plant=Wheat; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.1 +0.0 +0.2 N.D. -1.0
carbon source methyl-alpha-D-xylopyranoside (C) +0.2 -0.2 -0.1 N.D. -0.9
in planta Plant=Arabidopsis_efr; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.1 +0.1 +0.1 N.D. -1.0
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD2.0 +0.2 -0.1 +0.1 N.D. -0.9
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD2.0 +0.2 +0.1 -0.0 N.D. -1.1
in planta Plant=Sorghum_Btx_642; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.1 -0.0 +0.5 N.D. -1.0
in planta Plant=Sorghum_X50_665; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.0 -0.1 +0.3 N.D. -1.0
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.4 +0.3 +0.1 N.D. -1.4
phage AgroPhage_D04 +0.1 +0.4 +0.2 N.D. -0.6
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.1 +0.3 +0.9 N.D. -0.6
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.3 -0.3 +0.3 N.D. +0.8
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.2 +0.3 +0.6 N.D. +0.2
in planta Plant=Sorghum_SS_20; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.2 -0.0 +0.3 N.D. +0.9
in planta Plant=Sorghum_NK_300; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.0 -0.2 +0.3 N.D. +1.0
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.2 +0.1 +0.1 N.D. +1.2
stress R2A with m-arsenite 0.8 mM +0.0 -0.1 -0.1 N.D. +1.4
phage AgroPhage_C10 +0.1 +0.1 +0.3 N.D. +0.8
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.2 +0.4 +0.4 N.D. +0.5
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