Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu4045 and Atu4046 are separated by 218 nucleotidesAtu4046 and Atu4047 are separated by 363 nucleotidesAtu4047 and Atu4048 are separated by 24 nucleotidesAtu4048 and Atu4049 are separated by 124 nucleotides Atu4045: Atu4045 - glycine betaine ABC transporter permease, at 1,158,233 to 1,159,120 Atu4045 Atu4046: Atu4046 - glycine betaine ABC transporter substrate-binding protein, at 1,159,339 to 1,160,337 Atu4046 Atu4047: Atu4047 - two component sensor kinase/response regulator hybrid, at 1,160,701 to 1,163,676 Atu4047 Atu4048: Atu4048 - 2-hydroxyacid dehydrogenase, at 1,163,701 to 1,164,645 Atu4048 Atu4049: Atu4049 - exopolysaccharide polymerization/transport protein, at 1,164,770 to 1,167,163 Atu4049
Group Condition Atu4045 Atu4046 Atu4047 Atu4048 Atu4049
nitrogen source Choline chloride (N) -0.9 -0.7 +0.0 -0.1 N.D.
nitrogen source Choline chloride (N) -0.7 -0.7 +0.1 -0.0 N.D.
nitrogen source Betaine (N) -0.9 -0.7 +0.1 +0.2 N.D.
nitrogen source Betaine (N) -0.4 -0.6 +0.0 +0.1 N.D.
r2a_control R2A control +0.0 -0.3 -0.2 -0.3 N.D.
stress Chloramphenicol 12.5 ug/mL -0.3 +0.2 -0.3 -0.2 N.D.
Atjh14 -0.5 -0.2 +0.1 +0.2 N.D.
stress R2A with Polymyxin B sulfate 0.00075 mM -0.3 -0.1 -0.1 +0.2 N.D.
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.1 -0.3 -0.2 +0.3 N.D.
stress Chloramphenicol 12.5 ug/mL -0.0 +0.3 -0.2 -0.2 N.D.
phage AgroPhage_D10 -0.2 -0.3 +0.3 +0.1 N.D.
phage AgroPhage_E04 -0.4 -0.0 +0.1 +0.3 N.D.
phage AgroPhage_C04 -0.2 +0.2 +0.3 -0.3 N.D.
phage AgroPhage_C10 -0.3 +0.1 +0.1 +0.3 N.D.
in planta Plant=Sorghum_SS_20; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.1 -0.3 +0.2 +0.2 N.D.
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.3 +0.1 +0.3 +0.2 N.D.
in planta Plant=Sorghum_SS_20; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.3 -0.2 -0.0 +0.3 N.D.
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.1 +0.2 -0.1 +0.4 N.D.
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.3 -0.2 +0.3 +0.6 N.D.
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.2 +0.0 +0.4 +0.3 N.D.
no phage P2L5 -0.3 +0.4 +0.3 +0.1 N.D.
phage AgroPhage_D04 -0.1 +0.1 +0.4 +0.2 N.D.
in planta Plant=Sorghum_Btx_430; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.6 -0.1 +0.2 -0.2 N.D.
in planta Plant=Sorghum_NK_430; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.1 +0.3 +0.1 +0.3 N.D.
in planta Plant=Sorghum_X50_665; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.2 +0.5 -0.1 +0.0 N.D.
in planta Plant=Sorghum_NK_430; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.1 +0.3 -0.0 +0.4 N.D.
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.1 +0.3 -0.0 +0.7 N.D.
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.1 +0.3 +0.5 +0.1 N.D.
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.2 +0.4 +0.3 +0.1 N.D.
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.0 +0.2 +0.4 +0.4 N.D.
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