Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu3975 and Atu3976 are separated by 101 nucleotidesAtu3976 and Atu3977 are separated by 491 nucleotidesAtu3977 and Atu3978 are separated by 755 nucleotidesAtu3978 and Atu3979 are separated by 118 nucleotides Atu3975: Atu3975 - UDP-galactopyranose mutase, at 1,084,774 to 1,085,931 Atu3975 Atu3976: Atu3976 - hypothetical protein, at 1,086,033 to 1,088,078 Atu3976 Atu3977: Atu3977 - ice nucleation-like protein, at 1,088,570 to 1,091,539 Atu3977 Atu3978: Atu3978 - LysR family transcriptional regulator, at 1,092,295 to 1,093,194 Atu3978 Atu3979: Atu3979 - dioxygenase, at 1,093,313 to 1,094,245 Atu3979
Group Condition Atu3975 Atu3976 Atu3977 Atu3978 Atu3979
stress Chloramphenicol 12.5 ug/mL -0.2 -0.4 -0.1 -0.6 +0.3
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.0 -0.1 -0.1 -0.3 -0.4
carbon source Asolectin from soybean (C) -0.2 +0.0 -0.1 +0.1 -0.5
phage AgroPhage_C10 -0.5 -0.3 -0.1 +0.0 +0.1
in planta Plant=Wheat; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.3 -0.1 -0.0 -0.4 -0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.1 -0.1 +0.1 -0.4 +0.2
phage phage 95.1 +0.3 +0.0 -0.0 -0.2 -0.4
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.2 +0.2 +0.1 -0.3 +0.3
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.1 +0.3 +0.0 +0.1 -0.3
in planta Plant=Sorghum_X50_665; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.4 -0.2 +0.1 +0.2 -0.3
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.2 -0.2 -0.0 -0.2 +0.5
phage AgroPhage_E10 +0.1 +0.1 +0.0 +0.4 -0.3
stress R2A with Vancomycin 0.009 mM +0.3 +0.3 +0.0 -0.0 -0.2
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.4 -0.2 +0.0 -0.5 +0.8
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.2 +0.4 +0.1 +0.1 -0.2
in planta Plant=Maize; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.2 -0.0 +0.1 -0.2 +0.4
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.3 +0.2 +0.1 -0.2 +0.2
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.5 -0.0 +0.2 -0.2 +0.1
stress R2A with Vancomycin 0.009 mM +0.5 +0.3 -0.1 +0.0 -0.0
phage AgroPhage_D10 +0.4 +0.4 -0.1 -0.0 +0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.4 -0.2 +0.2 +0.2 +0.2
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.0 +0.2 +0.0 +0.3 +0.3
carbon source D-(-)-lyxose (C) +0.4 +0.4 +0.0 +0.1 -0.1
in planta Plant=Sorghum_NK_300; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.2 +0.2 +0.0 +0.0 +0.4
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.3 +0.2 +0.2 -0.1 +0.3
phage AgroPhage_F10 +0.1 +0.2 +0.1 +0.4 +0.1
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.3 +0.1 +0.0 +0.2 +0.2
phage AgroPhage_E04 +0.6 +0.2 +0.1 +0.1 +0.0
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.5 +0.2 +0.2 +0.4 -0.2
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.4 +0.2 +0.1 +0.1 +0.4
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