Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu3955 and Atu3956 are separated by 13 nucleotidesAtu3956 and Atu3957 are separated by 86 nucleotidesAtu3957 and Atu3958 are separated by 51 nucleotidesAtu3958 and Atu3959 overlap by 4 nucleotides Atu3955: Atu3955 - ABC transporter permease, at 1,058,613 to 1,059,461 Atu3955 Atu3956: Atu3956 - ABC transporter permease, at 1,059,475 to 1,060,566 Atu3956 Atu3957: Atu3957 - glycine-betaine ABC transporter substrate-binding protein, at 1,060,653 to 1,061,531 Atu3957 Atu3958: Atu3958 - oxidoreductase, at 1,061,583 to 1,062,929 Atu3958 Atu3959: Atu3959 - aldehyde dehydrogenase, at 1,062,926 to 1,064,443 Atu3959
Group Condition Atu3955 Atu3956 Atu3957 Atu3958 Atu3959
in planta Plant=Sorghum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.0 -0.6 -0.2 -0.0 -0.4
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.2 +0.2 -0.4 -0.6 +0.0
phage AgroPhage_B07 -0.3 -0.2 -0.0 -0.5 +0.2
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.4 -0.3 -0.3 +0.2 +0.4
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.3 +0.2 -0.3 -0.2 +0.1
in planta Plant=Sorghum_Btx_642; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.5 -0.1 -0.4 +0.4 +0.2
carbon source D-Saccharic potassium salt (C) +0.2 -0.3 +0.3 -0.2 -0.2
in planta Plant=Sorghum_Btx_430; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.0 +0.0 -0.4 +0.4 -0.2
phage AgroPhage_E04 -0.2 -0.6 +0.1 +0.0 +0.6
in planta Plant=Wheat; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.2 -0.2 -0.1 +0.1 +0.5
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.2 -0.4 +0.6 +0.3 -0.3
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days -0.3 +0.1 +0.2 -0.3 +0.4
phage AgroPhage_C10 -0.3 -0.1 +0.8 +0.2 -0.5
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.4 +0.5 +0.0 -0.3 +0.4
phage Phage 100.2 + bactiera +0.2 -0.3 -0.2 +0.2 +0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.2 +0.1 -0.0 -0.3 +0.6
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.0 -0.4 +0.5 -0.1 +0.3
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.6 +0.2 +0.6 -0.0 +0.0
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.2 -0.3 +0.2 +0.4 -0.1
in planta Plant=Sorghum_X50_665; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.4 -0.4 +1.0 -0.0 +0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.2 -0.2 +0.3 +0.0 +0.6
carbon source D-Saccharic potassium salt (C) -0.1 -0.0 +0.5 -0.2 +0.4
nitrogen source DL-2-Aminobutyric (N) -0.3 -0.1 +0.6 +0.6 -0.1
in planta Plant=Sorghum_Btx_430; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.2 +0.4 -0.5 +0.3 +0.3
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.3 +0.1 -0.3 +0.2 +0.5
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.2 -0.2 +0.1 +0.7 +0.3
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.2 +0.4 +0.3 +0.3 -0.0
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.1 +0.3 +0.4 +0.2 +0.3
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.3 +0.1 +0.7 +0.4 -0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.5 +0.7 -0.2 +0.2 +0.4
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