Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu3903 and Atu3904 are separated by 13 nucleotidesAtu3904 and Atu3905 are separated by 113 nucleotidesAtu3905 and Atu3906 are separated by 380 nucleotidesAtu3906 and Atu3907 are separated by 35 nucleotides Atu3903: Atu3903 - nitrate ABC transporter ATPase, at 1,001,909 to 1,002,706 Atu3903 Atu3904: Atu3904 - nitrate ABC transporter permease, at 1,002,720 to 1,003,613 Atu3904 Atu3905: Atu3905 - nitrate ABC transporter substrate-binding protein, at 1,003,727 to 1,005,019 Atu3905 Atu3906: Atu3906 - nitrate ABC transporter ATPase, at 1,005,400 to 1,006,695 Atu3906 Atu3907: Atu3907 - two component response regulator, at 1,006,731 to 1,007,318 Atu3907
Group Condition Atu3903 Atu3904 Atu3905 Atu3906 Atu3907
nitrogen source nitrate (N) -2.6 -2.8 -3.0 +0.2 -2.9
nitrogen source nitrate (N) -2.6 -2.9 -2.8 +0.1 -2.7
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.3 +0.1 -0.2 -0.9 -0.0
phage AgroPhage_F10 -0.2 -0.1 +0.0 -0.4 -0.4
in planta Plant=Sorghum_Btx_642; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.5 -0.2 -0.3 -0.1 +0.1
nophagecontrol No phage control -0.0 +0.0 +0.3 -0.3 -0.5
in planta Plant=Maize; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.3 -0.1 -0.2 -0.4 -0.2
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.1 +0.3 +0.1 -0.2 -0.5
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.0 +0.3 -0.4 +0.2 -0.3
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=1days +0.2 +0.2 +0.1 -0.3 -0.3
in planta Plant=Lettuce; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.1 -0.3 -0.4 +0.3 +0.2
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.3 -0.3 -0.0 +0.2 +0.5
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.3 -0.3 -0.0 +0.2 +0.4
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.4 -0.0 +0.4 -0.2 +0.3
in planta Plant=Sorghum_Btx_642; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.3 +0.4 -0.2 +0.2 -0.1
nitrogen source Orotic (N) -0.1 -0.1 -0.1 +0.8 -0.2
nitrogen source L-Isoleucine (N) -0.1 -0.1 +0.0 +1.1 -0.1
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.0 -0.1 +0.2 +0.3 +0.4
nitrogen source D-Glucosamine Hydrochloride (N) -0.1 -0.1 -0.1 +1.1 -0.0
nitrogen source spermidine (N) -0.0 +0.1 -0.2 +0.9 +0.1
nitrogen source D-Glucosamine Hydrochloride (N) -0.1 -0.1 -0.1 +1.2 -0.0
nitrogen source L-Histidine (N) +0.2 +0.3 +0.3 +0.2 -0.1
nitrogen source Putrescine (N) -0.0 -0.3 -0.1 +1.6 -0.1
nitrogen source Putrescine (N) -0.0 -0.0 -0.2 +1.5 -0.1
nitrogen source L-Isoleucine (N) +0.1 +0.1 -0.1 +1.1 -0.0
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.1 +0.9 +0.4 +0.2 -0.2
nitrogen source 5-Aminolevulinic (N) -0.2 -0.0 -0.1 +1.6 -0.0
in planta Plant=Sorghum_Btx_430; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.2 +0.3 +0.1 +0.3 +0.6
nitrogen source 5-Aminolevulinic (N) -0.1 +0.2 -0.1 +1.7 -0.1
nitrogen source Carnitine Hydrochloride (N) +0.1 +0.0 -0.1 +2.5 -0.1
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