Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu3900 and Atu3901 are separated by 214 nucleotidesAtu3901 and Atu3902 are separated by 5 nucleotidesAtu3902 and Atu3903 are separated by 5 nucleotidesAtu3903 and Atu3904 are separated by 13 nucleotides Atu3900: Atu3900 - nitrate reductase large subunit, at 996,252 to 998,900 Atu3900 Atu3901: Atu3901 - nitrite reductase small subunit, at 999,115 to 999,450 Atu3901 Atu3902: Atu3902 - nitrite reductase large subunit, at 999,456 to 1,001,903 Atu3902 Atu3903: Atu3903 - nitrate ABC transporter ATPase, at 1,001,909 to 1,002,706 Atu3903 Atu3904: Atu3904 - nitrate ABC transporter permease, at 1,002,720 to 1,003,613 Atu3904
Group Condition Atu3900 Atu3901 Atu3902 Atu3903 Atu3904
nitrogen source nitrate (N) -0.3 -3.0 -3.0 -2.6 -2.9
nitrogen source nitrate (N) -0.3 -2.8 -2.9 -2.6 -2.8
phage AgroPhage_C10 +0.1 -0.3 +0.1 -0.5 -0.4
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.2 -0.5 -0.1 -0.3 +0.1
in planta Plant=Sorghum_Btx_642; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.0 -0.4 +0.2 -0.5 -0.2
phage AgroPhage_A01 -0.0 -0.6 -0.0 +0.1 -0.3
in planta Plant=Sorghum_SS_20; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.1 -0.5 +0.0 +0.1 -0.3
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.0 -0.5 +0.2 -0.2 +0.2
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.1 -0.4 +0.3 +0.0 -0.2
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.2 -0.1 +0.1 -0.3 -0.3
nitrogen source DL-2-Aminobutyric (N) +0.2 -0.4 +0.2 +0.1 -0.2
stress R2A with Zinc chloride 0.05 mM -0.2 -0.3 -0.1 +0.1 +0.3
in planta Plant=Sorghum_Btx_642; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.2 +0.2 -0.0 -0.3 +0.4
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days +0.1 -0.4 -0.2 +0.3 +0.2
in planta Plant=Sorghum_NK_430; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.1 +0.4 +0.2 -0.0 -0.3
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.1 +0.4 -0.3 +0.2 -0.1
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.1 +0.3 +0.0 +0.3 -0.3
carbon source Rhamnogalacturonan - from potato (C) -0.2 +0.5 -0.1 +0.1 +0.1
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.1 +0.5 -0.1 -0.0 +0.3
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.2 +0.6 +0.1 -0.2 -0.0
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.3 +0.2 +0.2 +0.3 -0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.2 +0.7 -0.2 -0.0 +0.5
nitrogen source Putrescine (N) +0.5 +0.4 +0.2 -0.0 -0.0
in planta Plant=Sorghum_NK_300; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.1 +1.0 +0.2 -0.2 -0.2
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.1 +0.7 +0.1 +0.3 -0.0
nitrogen source L-Histidine (N) +0.2 +0.4 +0.2 +0.2 +0.2
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.2 +0.4 +0.2 -0.0 +0.4
nitrogen source L-Histidine (N) +0.2 +0.3 +0.2 +0.2 +0.3
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.2 +0.4 +0.1 -0.1 +0.9
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.1 +1.5 +0.1 +0.5 +0.3
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