Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu3897 and Atu3898 are separated by 107 nucleotidesAtu3898 and Atu3899 are separated by 141 nucleotidesAtu3899 and Atu3900 are separated by 10 nucleotidesAtu3900 and Atu3901 are separated by 214 nucleotides Atu3897: Atu3897 - glycerol-3-phosphate dehydrogenase, at 992,268 to 993,791 Atu3897 Atu3898: Atu3898 - DeoR family transcriptional regulator, at 993,899 to 994,672 Atu3898 Atu3899: Atu3899 - siroheme synthase, at 994,814 to 996,241 Atu3899 Atu3900: Atu3900 - nitrate reductase large subunit, at 996,252 to 998,900 Atu3900 Atu3901: Atu3901 - nitrite reductase small subunit, at 999,115 to 999,450 Atu3901
Group Condition Atu3897 Atu3898 Atu3899 Atu3900 Atu3901
nitrogen source nitrate (N) -0.1 +0.0 -0.3 -0.3 -3.0
nitrogen source nitrate (N) -0.0 -0.0 -0.3 -0.3 -2.8
carbon source L-Sorbose (C) +0.0 -2.6 -0.1 -0.0 +0.1
carbon source L-Sorbose (C) +0.1 -2.7 -0.1 -0.1 +0.4
carbon source D-Saccharic potassium salt (C) +0.1 -2.2 +0.2 -0.0 -0.1
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.6 -0.6 +0.0 -0.2 -0.5
in planta Plant=Sorghum_Btx_430; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.1 -1.6 +0.1 +0.1 -0.2
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.6 -0.5 -0.0 -0.1 -0.4
in planta Plant=Sorghum_Btx_430; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.0 -1.1 -0.2 -0.1 -0.3
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.0 -0.9 -0.1 +0.0 -0.5
carbon source D-Saccharic potassium salt (C) +0.1 -1.7 +0.0 +0.1 +0.0
in planta Plant=Sorghum_NK_300; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.0 -1.1 -0.2 -0.1 -0.0
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.4 -0.6 -0.4 -0.2 +0.3
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.4 -0.5 +0.1 -0.0 -0.5
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days -0.2 -0.5 -0.3 +0.1 -0.4
nitrogen source DL-2-Aminobutyric (N) +0.0 -0.4 -0.3 +0.2 -0.4
in planta Plant=Sorghum_SS_20; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.0 -0.7 +0.3 -0.1 -0.5
carbon source Methyl alpha-D-glucopyranoside (C) +0.1 -1.1 -0.0 -0.0 +0.1
in planta Plant=Sorghum_SS_20; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.2 -0.9 +0.4 +0.1 -0.2
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.1 -0.7 +0.2 +0.2 -0.1
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.3 -0.7 -0.2 +0.2 +0.6
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.2 -0.6 +0.0 +0.0 +0.6
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.3 -0.6 +0.4 +0.2 +0.3
no phage P2L5 +0.6 -0.4 -0.1 +0.2 -0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.0 -0.7 +0.3 -0.2 +0.7
phage AgroPhage_C04 -0.6 +0.6 +0.2 +0.2 +0.2
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.4 +0.5 +0.3 +0.1 +0.4
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.4 -0.5 +0.3 +0.1 +1.5
carbon source Dihydroxyacetone (C) -0.8 +3.0 -0.1 -0.0 -0.3
carbon source Dihydroxyacetone (C) -0.8 +3.1 -0.1 +0.0 -0.1
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