Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu3896 and Atu3897 are separated by 37 nucleotidesAtu3897 and Atu3898 are separated by 107 nucleotidesAtu3898 and Atu3899 are separated by 141 nucleotidesAtu3899 and Atu3900 are separated by 10 nucleotides Atu3896: Atu3896 - sugar ABC transporter ATPase, at 991,160 to 992,230 Atu3896 Atu3897: Atu3897 - glycerol-3-phosphate dehydrogenase, at 992,268 to 993,791 Atu3897 Atu3898: Atu3898 - DeoR family transcriptional regulator, at 993,899 to 994,672 Atu3898 Atu3899: Atu3899 - siroheme synthase, at 994,814 to 996,241 Atu3899 Atu3900: Atu3900 - nitrate reductase large subunit, at 996,252 to 998,900 Atu3900
Group Condition Atu3896 Atu3897 Atu3898 Atu3899 Atu3900
carbon source L-Sorbose (C) +0.1 +0.1 -2.7 -0.1 -0.1
carbon source L-Sorbose (C) +0.1 +0.0 -2.6 -0.1 -0.0
carbon source D-Saccharic potassium salt (C) +0.2 +0.1 -2.2 +0.2 -0.0
carbon source DL-glyceraldehyde (C) -1.0 -0.7 +0.1 -0.0 +0.0
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.0 -0.4 -0.6 -0.4 -0.2
carbon source DL-glyceraldehyde (C) -0.7 -0.8 +0.0 -0.1 -0.0
phage Phage 100.2 + bactiera -0.7 -0.6 -0.2 +0.0 -0.0
carbon source Glycerol (C) -0.7 -0.8 +0.1 -0.1 +0.0
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.4 -0.3 -0.7 -0.2 +0.2
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.5 -0.4 -0.5 +0.1 -0.0
carbon source D-Saccharic potassium salt (C) +0.3 +0.1 -1.6 +0.0 +0.1
in planta Plant=Sorghum_Btx_430; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.1 -0.0 -1.1 -0.2 -0.1
phage Phage 100.1 + bacteria -0.6 -0.7 +0.2 -0.2 -0.0
phage Phage 100.2 + bactiera -0.8 -0.7 +0.2 -0.1 +0.1
phage Phage 100.1 + bacteria -0.8 -0.7 +0.2 +0.2 -0.0
in planta Plant=Sorghum_Btx_430; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.5 -0.1 -1.6 +0.1 +0.1
phage Phage 100.1 + bacteria -0.6 -0.8 +0.2 +0.1 +0.1
phage Phage 99.2 + bacteria -0.8 -0.5 +0.2 -0.0 +0.1
carbon source Methyl alpha-D-glucopyranoside (C) +0.3 +0.1 -1.1 -0.0 -0.0
in planta Plant=Sorghum_SS_20; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.0 -0.2 -0.9 +0.4 +0.1
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.1 -0.3 -0.6 +0.4 +0.2
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.2 -0.1 -0.9 +0.3 +0.1
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.3 -0.4 -0.5 +0.3 +0.1
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.2 -0.2 -0.7 +0.2 +0.2
carbon source L-ascorbate (C) +0.2 +0.2 -0.9 +0.1 +0.1
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.4 -0.4 +0.5 +0.3 +0.1
phage AgroPhage_C04 -0.2 -0.6 +0.6 +0.2 +0.2
no phage P2L5 +0.2 +0.6 -0.4 -0.2 +0.2
carbon source Dihydroxyacetone (C) -0.7 -0.8 +3.0 -0.1 -0.0
carbon source Dihydroxyacetone (C) -0.8 -0.8 +3.1 -0.1 +0.0
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