Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu3895 and Atu3896 are separated by 14 nucleotidesAtu3896 and Atu3897 are separated by 37 nucleotidesAtu3897 and Atu3898 are separated by 107 nucleotidesAtu3898 and Atu3899 are separated by 141 nucleotides Atu3895: Atu3895 - sugar ABC transporter ATPase, at 990,075 to 991,145 Atu3895 Atu3896: Atu3896 - sugar ABC transporter ATPase, at 991,160 to 992,230 Atu3896 Atu3897: Atu3897 - glycerol-3-phosphate dehydrogenase, at 992,268 to 993,791 Atu3897 Atu3898: Atu3898 - DeoR family transcriptional regulator, at 993,899 to 994,672 Atu3898 Atu3899: Atu3899 - siroheme synthase, at 994,814 to 996,241 Atu3899
Group Condition Atu3895 Atu3896 Atu3897 Atu3898 Atu3899
carbon source L-Sorbose (C) +0.0 +0.1 +0.1 -2.7 -0.1
carbon source DL-glyceraldehyde (C) -0.8 -1.0 -0.7 +0.1 -0.0
carbon source L-Sorbose (C) +0.2 +0.1 +0.0 -2.6 -0.1
carbon source Glycerol (C) -0.8 -0.7 -0.8 +0.1 -0.1
phage Phage 100.2 + bactiera -0.7 -0.5 -0.8 -0.0 -0.1
carbon source DL-glyceraldehyde (C) -0.6 -0.7 -0.8 +0.0 -0.1
phage Phage 100.2 + bactiera -0.6 -0.7 -0.6 -0.2 +0.0
carbon source Glycerol (C) -0.7 -0.6 -0.6 -0.1 +0.0
phage Phage 100.2 + bactiera -0.7 -0.8 -0.7 +0.2 -0.1
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.3 -0.4 -0.3 -0.7 -0.2
phage Phage 100.1 + bacteria -0.7 -0.8 -0.7 +0.2 +0.2
phage Phage 100.1 + bacteria -0.7 -0.6 -0.8 +0.2 +0.1
phage Phage 100.3 + bacteria -0.6 -0.5 -0.6 -0.1 -0.0
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.3 -0.0 -0.4 -0.6 -0.4
phage Phage 100.1 + bacteria -0.5 -0.6 -0.7 +0.2 -0.2
carbon source Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C) -0.4 -0.4 -0.5 -0.3 +0.0
carbon source D-Saccharic potassium salt (C) +0.0 +0.2 +0.1 -2.2 +0.2
phage Phage 99.2 + bacteria -0.6 -0.5 -0.5 +0.1 +0.1
phage Phage 99.2 + bacteria -0.5 -0.7 -0.5 +0.1 +0.0
phage Phage 99.2 + bacteria -0.3 -0.8 -0.5 +0.2 -0.0
in planta Plant=Sorghum_Btx_430; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.1 +0.5 -0.1 -1.6 +0.1
carbon source D-Saccharic potassium salt (C) +0.0 +0.3 +0.1 -1.6 +0.0
in planta Plant=Sorghum_SS_20; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.2 +0.0 -0.2 -0.9 +0.4
carbon source Methyl alpha-D-glucopyranoside (C) +0.2 +0.3 +0.1 -1.1 -0.0
carbon source Dihydroxyacetone (C) -1.0 -0.8 -0.8 +3.1 -0.1
phage AgroPhage_C04 +0.4 -0.2 -0.6 +0.6 +0.2
carbon source Dihydroxyacetone (C) -0.7 -0.7 -0.8 +3.0 -0.1
carbon source Myristic (C) +0.4 +0.4 +0.3 -0.5 +0.0
carbon source Myristic (C) +0.4 +0.6 +0.4 -0.3 -0.0
carbon source acetate (C) +0.5 +0.5 +0.4 -0.3 +0.0
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