Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu3894 and Atu3895 are separated by 2 nucleotidesAtu3895 and Atu3896 are separated by 14 nucleotidesAtu3896 and Atu3897 are separated by 37 nucleotidesAtu3897 and Atu3898 are separated by 107 nucleotides Atu3894: Atu3894 - sugar ABC transporter permease, at 989,206 to 990,072 Atu3894 Atu3895: Atu3895 - sugar ABC transporter ATPase, at 990,075 to 991,145 Atu3895 Atu3896: Atu3896 - sugar ABC transporter ATPase, at 991,160 to 992,230 Atu3896 Atu3897: Atu3897 - glycerol-3-phosphate dehydrogenase, at 992,268 to 993,791 Atu3897 Atu3898: Atu3898 - DeoR family transcriptional regulator, at 993,899 to 994,672 Atu3898
Group Condition Atu3894 Atu3895 Atu3896 Atu3897 Atu3898
carbon source DL-glyceraldehyde (C) -0.9 -0.8 -1.0 -0.7 +0.1
carbon source DL-glyceraldehyde (C) -0.8 -0.6 -0.7 -0.8 +0.0
phage Phage 100.2 + bactiera -0.6 -0.6 -0.7 -0.6 -0.2
carbon source Glycerol (C) -0.6 -0.8 -0.7 -0.8 +0.1
phage Phage 100.2 + bactiera -0.8 -0.7 -0.8 -0.7 +0.2
phage Phage 100.2 + bactiera -0.6 -0.7 -0.5 -0.8 -0.0
carbon source Glycerol (C) -0.6 -0.7 -0.6 -0.6 -0.1
phage Phage 100.1 + bacteria -0.6 -0.7 -0.8 -0.7 +0.2
phage Phage 100.1 + bacteria -0.6 -0.7 -0.6 -0.8 +0.2
carbon source L-Sorbose (C) -0.1 +0.2 +0.1 +0.0 -2.6
phage Phage 100.3 + bacteria -0.6 -0.6 -0.5 -0.6 -0.1
carbon source L-Sorbose (C) +0.1 +0.0 +0.1 +0.1 -2.7
phage Phage 100.1 + bacteria -0.8 -0.5 -0.6 -0.7 +0.2
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.5 -0.3 -0.4 -0.3 -0.7
phage Phage 99.2 + bacteria -0.6 -0.3 -0.8 -0.5 +0.2
phage Phage 99.2 + bacteria -0.5 -0.5 -0.7 -0.5 +0.1
carbon source Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C) -0.4 -0.4 -0.4 -0.5 -0.3
phage Phage 99.2 + bacteria -0.5 -0.6 -0.5 -0.5 +0.1
phage Phage 100.3 + bacteria -0.5 -0.5 -0.5 -0.3 +0.0
carbon source D-Saccharic potassium salt (C) +0.1 +0.0 +0.2 +0.1 -2.2
in planta Plant=Sorghum_Btx_430; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.1 -0.1 +0.5 -0.1 -1.6
carbon source D-Saccharic potassium salt (C) +0.0 +0.0 +0.3 +0.1 -1.6
carbon source Dihydroxyacetone (C) -0.9 -1.0 -0.8 -0.8 +3.1
carbon source Methyl alpha-D-glucopyranoside (C) +0.3 +0.2 +0.3 +0.1 -1.1
carbon source Dihydroxyacetone (C) -0.9 -0.7 -0.7 -0.8 +3.0
phage AgroPhage_C04 -0.2 +0.4 -0.2 -0.6 +0.6
no phage P2L5 +0.5 +0.2 +0.2 +0.6 -0.4
carbon source Myristic (C) +0.4 +0.4 +0.4 +0.3 -0.5
carbon source Myristic (C) +0.2 +0.4 +0.6 +0.4 -0.3
carbon source acetate (C) +0.4 +0.5 +0.5 +0.4 -0.3
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