Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu3887 and Atu3888 are separated by 62 nucleotidesAtu3888 and Atu3889 are separated by 98 nucleotidesAtu3889 and Atu3890 are separated by 6 nucleotidesAtu3890 and Atu3891 are separated by 72 nucleotides Atu3887: Atu3887 - small heat shock protein, at 981,981 to 982,463 Atu3887 Atu3888: Atu3888 - hypothetical protein, at 982,526 to 983,545 Atu3888 Atu3889: Atu3889 - LysR family transcriptional regulator, at 983,644 to 984,504 Atu3889 Atu3890: Atu3890 - glycerol kinase, at 984,511 to 986,010 Atu3890 Atu3891: Atu3891 - hypothetical protein, at 986,083 to 987,804 Atu3891
Group Condition Atu3887 Atu3888 Atu3889 Atu3890 Atu3891
carbon source DL-glyceraldehyde (C) -0.0 -0.2 -0.0 -2.2 -0.7
carbon source Dihydroxyacetone (C) -0.2 -0.3 -0.1 -1.5 -0.7
carbon source Dihydroxyacetone (C) -0.2 -0.3 +0.1 -1.4 -0.9
carbon source DL-glyceraldehyde (C) -0.1 -0.1 -0.1 -1.5 -0.6
carbon source L-ascorbate (C) -0.2 -1.9 -0.3 +0.3 +0.0
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.8 -0.2 +0.0 -0.7 -0.1
carbon source Glycerol (C) +0.0 -0.1 +0.0 -1.2 -0.6
carbon source Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C) -0.2 -0.2 -0.2 -0.9 -0.4
carbon source Glycerol (C) -0.1 +0.0 +0.0 -1.1 -0.6
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.6 +0.3 -0.5 -0.6 -0.3
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -1.0 -0.3 +0.3 -0.4 -0.4
phage Phage 100.2 + bactiera +0.2 -0.1 +0.0 -1.0 -0.6
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.4 +0.1 -0.5 -0.9 +0.2
phage Phage 100.2 + bactiera +0.3 -0.0 +0.1 -0.9 -0.7
phage Phage 100.2 + bactiera +0.3 -0.1 -0.1 -0.9 -0.6
phage Phage 100.1 + bacteria +0.5 -0.2 -0.0 -0.9 -0.7
carbon source L-ascorbate (C) -0.3 -1.2 -0.1 +0.2 +0.1
phage Phage 100.1 + bacteria +0.4 -0.1 +0.0 -0.9 -0.6
phage Phage 99.2 + bacteria +0.4 -0.1 +0.0 -0.9 -0.4
phage Phage 100.1 + bacteria +0.4 -0.1 +0.1 -0.8 -0.5
phage Phage 99.2 + bacteria +0.5 -0.1 -0.1 -0.8 -0.5
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.2 +0.2 +0.2 -0.8 -0.4
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.5 -0.5 -0.2 -0.3 -0.5
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.1 +0.5 -0.2 -0.8 -0.3
in planta Plant=Sorghum_X50_665; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.7 -1.0 -0.4 -0.2 +0.3
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.6 -0.3 +0.1 -0.5 -0.3
nitrogen source DL-2-Aminobutyric (N) +0.2 -0.6 +0.9 -0.6 +0.7
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.4 +0.1 +0.4 +0.2 +0.7
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.3 +0.4 +0.6 -0.3 +0.3
stress Erythromycin 12.5 ug/mL +0.4 +0.0 +0.1 +1.0 +0.4
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