Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu3828 and Atu3829 are separated by 66 nucleotidesAtu3829 and Atu3830 are separated by 90 nucleotidesAtu3830 and Atu3831 are separated by 319 nucleotidesAtu3831 and Atu3832 are separated by 207 nucleotides Atu3828: Atu3828 - acetyltransferase, at 923,782 to 924,360 Atu3828 Atu3829: Atu3829 - LysR family transcriptional regulator, at 924,427 to 925,278 Atu3829 Atu3830: Atu3830 - MFS permease, at 925,369 to 926,625 Atu3830 Atu3831: Atu3831 - phage-related integrase, at 926,945 to 928,135 Atu3831 Atu3832: Atu3832 - hypothetical protein, at 928,343 to 929,884 Atu3832
Group Condition Atu3828 Atu3829 Atu3830 Atu3831 Atu3832
stress R2A with tungstate 375 mM +0.1 -0.8 -0.3 -0.2 +0.0
phage AgroPhage_E10 -0.3 -0.2 -0.5 -0.0 +0.1
nophagecontrol No phage control -0.1 -0.3 +0.2 -0.2 -0.3
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=1days +0.2 -0.2 -0.3 -0.1 -0.2
phage AgroPhage_F04 +0.0 -0.9 +0.3 +0.0 -0.1
phage AgroPhage_B07 +0.3 -0.3 -0.3 -0.1 -0.1
Atjh15 +0.1 -0.4 -0.1 -0.1 +0.2
nitrogen source DL-2-Aminobutyric (N) -0.3 +0.2 -0.5 -0.1 +0.3
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days +0.4 -0.2 -0.2 -0.1 -0.2
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.4 -0.5 -0.0 +0.1 -0.2
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.4 -0.4 +0.1 -0.2 -0.1
stress Chloramphenicol 12.5 ug/mL -0.4 -0.3 +0.4 +0.2 +0.1
stress Chloramphenicol 12.5 ug/mL +0.2 -0.3 -0.2 +0.1 +0.3
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.3 -0.3 +0.4 +0.0 -0.1
in planta Plant=Maize; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.1 +0.2 -0.2 +0.3 -0.2
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.3 +0.5 -0.0 +0.2 +0.1
in planta Plant=Sorghum_Btx_642; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.4 -0.0 -0.3 +0.0 +0.3
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.4 +0.2 +0.3 +0.2 +0.2
in planta Plant=Sorghum_X50_665; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.4 +0.2 +0.3 +0.0 -0.4
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.4 -0.1 -0.1 +0.2 +0.3
Atjh2 -0.3 +0.5 -0.0 +0.1 +0.3
in planta Plant=Sorghum_NK_300; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.5 +0.2 +0.1 -0.2 -0.1
in planta Plant=Sorghum_Btx_642; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.1 +0.1 -0.1 +0.3 +0.4
in planta Plant=Sorghum_X54_243; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.2 +0.3 +0.1 +0.1 +0.5
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.2 +0.3 +0.4 +0.0 +0.3
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.0 +0.0 +0.1 +0.6 +0.3
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.9 -0.5 +0.3 +0.2 +0.3
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.4 +0.2 +0.4 +0.1 +0.2
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.2 +0.5 +0.5 -0.1 +0.2
in planta Plant=Sorghum_NK_300; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.2 +0.5 +0.3 +0.3 +0.2
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