Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu3813 and Atu3814 are separated by 10 nucleotidesAtu3814 and Atu3815 are separated by 29 nucleotidesAtu3815 and Atu3816 are separated by 282 nucleotidesAtu3816 and Atu3817 are separated by 298 nucleotides Atu3813: Atu3813 - 3-oxoacyl-ACP reductase, at 909,271 to 910,017 Atu3813 Atu3814: Atu3814 - hypothetical protein, at 910,028 to 910,357 Atu3814 Atu3815: Atu3815 - GntR family transcriptional regulator, at 910,387 to 911,046 Atu3815 Atu3816: Atu3816 - D-threo-aldose 1-dehydrogenase, at 911,329 to 912,375 Atu3816 Atu3817: Atu3817 - dehydratase, at 912,674 to 914,185 Atu3817
Group Condition Atu3813 Atu3814 Atu3815 Atu3816 Atu3817
carbon source L-Xylose (C) -1.2 -0.2 +1.0 -0.8 -2.1
carbon source L-Xylose (C) -0.9 +0.0 +0.9 -0.7 -2.2
stress R2A with m-arsenite 0.8 mM -0.3 -0.2 -2.7 +0.0 +0.2
carbon source L-Sorbose (C) -0.3 +0.0 -1.9 -0.0 -0.4
carbon source L-Arabinose (C) +0.1 +0.0 -2.5 -0.0 -0.2
carbon source methyl-beta-L-arabinopyranoside (C) -0.1 +0.1 -2.2 -0.1 -0.1
carbon source L-Sorbose (C) -0.1 +0.0 -2.1 -0.0 +0.0
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.1 -0.0 -1.1 -0.2 -0.5
stress R2A with m-arsenite 0.8 mM +0.1 +0.0 -2.1 -0.1 +0.2
phage AgroPhage_C04 -0.3 -0.0 -1.2 +0.2 -0.5
carbon source methyl-beta-L-arabinopyranoside (C) +0.2 +0.0 -1.8 +0.0 -0.1
carbon source L-Arabinose (C) +0.1 +0.2 -2.1 +0.0 +0.0
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.8 -0.0 -0.9 +0.2 +0.3
in planta Plant=Sorghum_Btx_430; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.7 -0.4 +0.3 +0.1 -0.2
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.7 +1.0 -0.8 +0.1 -0.6
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.1 +0.5 -0.6 -0.3 -0.4
in planta Plant=Maize; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.6 -0.3 -0.6 +0.3 -0.3
in planta Plant=Sorghum_NK_300; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.4 +0.3 -0.2 +0.3 -0.4
in planta Plant=Sorghum_SS_20; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.6 +0.4 -0.4 +0.4 -0.0
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.6 +0.7 -0.1 -0.2 -0.5
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.4 +0.3 -0.9 +0.1 +0.6
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.4 +0.3 -0.5 +0.4 +0.0
carbon source D-Ribose (C) +0.0 -0.1 +1.3 -0.0 -0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.5 -0.4 +0.6 +0.2 +0.3
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.4 +0.5 -0.2 +0.2 +0.4
carbon source D-Ribose (C) +0.1 +0.1 +1.2 +0.2 -0.2
carbon source D-Arabinose (C) -0.1 -0.0 +1.8 -0.1 +0.1
carbon source D-Arabinose (C) +0.0 +0.1 +1.8 -0.0 -0.1
carbon source Xylitol (C) -0.2 +0.1 +2.6 +0.0 +0.1
carbon source Xylitol (C) -0.0 -0.2 +3.1 +0.1 -0.0
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