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Protein
Homologs
Fitness for 5 genes in
Agrobacterium fabrum C58
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Atu3797 and Atu3798 are separated by 305 nucleotides
Atu3798 and Atu3799 are separated by 35 nucleotides
Atu3799 and Atu3800 are separated by 283 nucleotides
Atu3800 and Atu3801 are separated by 95 nucleotides
Atu3797: Atu3797 - HlyD family secretion protein, at 892,422 to 893,498
Atu3797
Atu3798: Atu3798 - TetR family transcriptional regulator, at 893,804 to 894,418
Atu3798
Atu3799: Atu3799 - GntR family transcriptional regulator, at 894,454 to 895,437
Atu3799
Atu3800: Atu3800 - proline/glycine betaine ABC transporter substrate-binding protein, at 895,721 to 896,758
Atu3800
Atu3801: Atu3801 - proline/glycine betaine ABC transporter permease, at 896,854 to 897,711
Atu3801
Group
Condition
Atu3797
Atu3798
Atu3799
Atu3800
Atu3801
carbon source
Ethyl benzoate (C)
+0.7
-5.8
-0.5
-0.0
-0.0
carbon source
Ethyl benzoate (C)
+0.5
-4.0
-0.4
-0.1
+0.1
stress
R2A with m-arsenite 0.8 mM
-0.1
-1.6
-1.2
+0.0
-0.2
carbon source
D-Saccharic potassium salt (C)
-0.0
-0.8
-2.0
-0.0
-0.0
stress
R2A with Polymyxin B sulfate 0.00075 mM
-0.4
-2.1
-0.2
-0.0
-0.1
stress
R2A with m-arsenite 0.8 mM
+0.1
-1.5
-1.6
+0.1
+0.1
carbon source
D-Saccharic potassium salt (C)
+0.2
-0.6
-2.2
+0.1
-0.1
in planta
Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
-0.0
-0.6
-1.4
-0.2
-0.1
stress
methyl jasmonate 5 mM
+1.3
-3.6
+0.1
-0.0
+0.2
stress
R2A with Tetracycline 0.002 mM
+0.3
-1.9
-0.2
-0.0
+0.1
stress
R2A with Tetracycline 0.002 mM
+0.9
-1.4
-0.3
-0.2
-0.3
in planta
Plant=Sorghum_X50_665; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
+0.0
-1.3
-0.4
-0.0
+0.4
in planta
Plant=Maize; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days
-0.1
-1.6
-0.1
+0.3
+0.3
in planta
Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
+0.1
-0.9
-0.7
+0.2
+0.2
in planta
Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
-0.0
-1.0
-0.5
+0.4
+0.2
stress
Dodecyl Sulfate 0.2 mM
-3.7
+3.0
-0.3
+0.0
+0.1
stress
Nerol 1.25 mM
+0.4
-1.5
+0.0
+0.0
+0.2
stress
methyl jasmonate 5 mM
+1.3
-2.5
+0.2
+0.1
+0.3
stress
Dodecyl Sulfate 0.2 mM
-2.4
+1.8
-0.1
-0.0
+0.2
stress
D(+)-Carvone 5 mM
+0.8
-1.5
-0.1
+0.1
+0.2
nitrogen source
DL-2-Aminobutyric (N)
+0.9
-0.5
-0.4
-0.5
+0.0
stress
D(+)-Carvone 5 mM
+0.9
-1.5
+0.1
+0.1
+0.0
phage
AgroPhage_C10
+0.1
+1.3
-0.6
-0.0
-0.1
stress
Guaiacol 5 mM
+2.1
-1.4
+0.1
-0.1
+0.0
in planta
Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
+0.2
+0.7
-0.6
+0.0
+0.6
stress
Guaiacol 5 mM
+1.9
-1.3
+0.2
-0.0
+0.2
stress
R2A with Vancomycin 0.009 mM
+0.1
+0.8
+1.2
-0.1
-0.1
stress
R2A with Vancomycin 0.009 mM
+0.4
+0.5
+1.3
-0.2
-0.0
nitrogen source
Choline chloride (N)
-0.0
-0.0
+2.8
-0.1
+0.0
nitrogen source
Choline chloride (N)
+0.0
-0.0
+3.0
-0.0
-0.1
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