Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu3791 and Atu3792 overlap by 4 nucleotidesAtu3792 and Atu3793 are separated by 258 nucleotidesAtu3793 and Atu3794 overlap by 32 nucleotidesAtu3794 and Atu3795 are separated by 209 nucleotides Atu3791: Atu3791 - L-asparaginase, at 883,263 to 884,216 Atu3791 Atu3792: Atu3792 - L-asparagine permease, at 884,213 to 885,670 Atu3792 Atu3793: Atu3793 - aspartate ammonia-lyase, at 885,929 to 887,374 Atu3793 Atu3794: Atu3794 - FadR family transcriptional regulator, at 887,343 to 888,059 Atu3794 Atu3795: Atu3795 - AcrB/AcrD/AcrF family protein, at 888,269 to 891,340 Atu3795
Group Condition Atu3791 Atu3792 Atu3793 Atu3794 Atu3795
stress R2A with m-arsenite 0.8 mM -3.3 +0.1 -0.7 -3.3 -0.1
stress R2A with m-arsenite 0.8 mM -2.9 +0.1 -0.7 -2.3 -0.0
carbon source D-glutamine (C) -0.7 +0.2 -0.3 -5.0 -0.0
carbon source D-glutamine (C) -0.5 +0.3 -0.2 -4.9 -0.1
stress Dodecyl Sulfate 0.2 mM +0.2 -0.6 -0.2 +0.5 -3.9
nitrogen source L-Histidine (N) -0.8 +1.5 -0.3 -2.9 -0.1
nitrogen source L-Histidine (N) -0.8 +1.7 -0.4 -2.8 -0.1
stress Dodecyl Sulfate 0.2 mM +0.2 -0.5 -0.1 +0.5 -2.4
carbon source NAG (C) -0.8 +0.3 -0.0 -1.8 +0.2
carbon source NAG (C) -0.8 +0.3 -0.1 -1.7 +0.2
carbon source Ethyl benzoate (C) -1.0 +0.6 -0.2 -1.2 +0.7
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +1.0 -0.7 +0.1 +1.1 +0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +1.0 -0.5 +0.1 +1.3 +0.2
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +1.0 -0.6 +0.2 +1.6 +0.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.9 -0.4 +0.3 +1.3 +0.3
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days +1.4 -0.5 +0.1 +1.6 -0.0
in planta Plant=Cucumber; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +1.2 -0.1 -0.1 +1.7 +0.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +1.5 -0.4 +0.2 +1.1 +0.5
in planta Plant=Cucumber; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +1.4 -0.3 +0.0 +1.9 -0.1
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days +1.4 -0.1 +0.1 +1.7 +0.0
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +1.7 -0.3 +0.2 +2.3 +0.2
carbon source D-Saccharic potassium salt (C) +1.6 +2.8 -0.2 -0.2 +0.1
carbon source D-Saccharic potassium salt (C) +1.6 +2.9 -0.0 -0.1 -0.1
in planta Plant=Cucumber; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +1.7 -0.3 -0.0 +3.0 -0.0
in planta Plant=Cucumber; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +2.0 -0.4 +0.1 +3.1 +0.1
nitrogen source L-Aspartic Acid (N) +1.9 +1.6 -0.4 +2.0 -0.1
nitrogen source L-Aspartic Acid (N) +2.1 +1.7 -0.5 +2.1 -0.0
carbon source L-Alanine (C) +1.9 +0.5 +0.1 +4.2 +0.1
carbon source L-Alanine (C) +1.9 +0.4 +0.1 +4.4 +0.1
nitrogen source DL-2-Aminobutyric (N) -0.8 +10.1 -0.5 -0.9 -0.2
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