Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu3790 and Atu3791 are separated by 552 nucleotidesAtu3791 and Atu3792 overlap by 4 nucleotidesAtu3792 and Atu3793 are separated by 258 nucleotidesAtu3793 and Atu3794 overlap by 32 nucleotides Atu3790: Atu3790 - potassium-transporting ATPase subunit A, at 881,007 to 882,710 Atu3790 Atu3791: Atu3791 - L-asparaginase, at 883,263 to 884,216 Atu3791 Atu3792: Atu3792 - L-asparagine permease, at 884,213 to 885,670 Atu3792 Atu3793: Atu3793 - aspartate ammonia-lyase, at 885,929 to 887,374 Atu3793 Atu3794: Atu3794 - FadR family transcriptional regulator, at 887,343 to 888,059 Atu3794
Group Condition Atu3790 Atu3791 Atu3792 Atu3793 Atu3794
stress R2A with m-arsenite 0.8 mM +0.2 -3.3 +0.1 -0.7 -3.3
carbon source D-glutamine (C) -0.1 -0.7 +0.2 -0.3 -5.0
stress R2A with m-arsenite 0.8 mM +0.1 -2.9 +0.1 -0.7 -2.3
carbon source D-glutamine (C) -0.1 -0.5 +0.3 -0.2 -4.9
carbon source acetate (C) -0.1 -1.1 -0.4 -0.1 -1.2
nitrogen source L-Histidine (N) +0.0 -0.8 +1.5 -0.3 -2.9
carbon source NAG (C) -0.1 -0.8 +0.3 -0.0 -1.8
carbon source NAG (C) -0.1 -0.8 +0.3 -0.1 -1.7
nitrogen source L-Histidine (N) -0.0 -0.8 +1.7 -0.4 -2.8
carbon source Ethyl benzoate (C) +0.0 -1.0 +0.6 -0.2 -1.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.2 +1.0 -0.7 +0.1 +1.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.1 +0.9 -0.4 +0.3 +1.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.1 +1.0 -0.5 +0.1 +1.3
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.0 +1.0 -0.6 +0.2 +1.6
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.1 +1.5 -0.4 +0.2 +1.1
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days -0.1 +1.4 -0.5 +0.1 +1.6
in planta Plant=Cucumber; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.2 +1.2 -0.1 -0.1 +1.7
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.2 +1.0 -0.2 +0.1 +1.5
in planta Plant=Cucumber; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.0 +1.4 -0.3 +0.0 +1.9
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days -0.0 +1.4 -0.1 +0.1 +1.7
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.2 +1.7 -0.3 +0.2 +2.3
carbon source D-Saccharic potassium salt (C) -0.2 +1.6 +2.8 -0.2 -0.2
in planta Plant=Cucumber; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.3 +1.7 -0.3 -0.0 +3.0
carbon source D-Saccharic potassium salt (C) -0.0 +1.6 +2.9 -0.0 -0.1
in planta Plant=Cucumber; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.1 +2.0 -0.4 +0.1 +3.1
nitrogen source L-Aspartic Acid (N) +0.1 +1.9 +1.6 -0.4 +2.0
nitrogen source L-Aspartic Acid (N) +0.0 +2.1 +1.7 -0.5 +2.1
carbon source L-Alanine (C) -0.1 +1.9 +0.5 +0.1 +4.2
carbon source L-Alanine (C) -0.0 +1.9 +0.4 +0.1 +4.4
nitrogen source DL-2-Aminobutyric (N) +0.3 -0.8 +10.1 -0.5 -0.9
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