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Homologs
Fitness for 5 genes in
Agrobacterium fabrum C58
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Atu3709 and Atu3710 are separated by 188 nucleotides
Atu3710 and Atu3711 are separated by 154 nucleotides
Atu3711 and Atu3712 are separated by 24 nucleotides
Atu3712 and Atu3713 are separated by 173 nucleotides
Atu3709: Atu3709 - phosphoglucosamine mutase, at 789,459 to 790,811
Atu3709
Atu3710: Atu3710 - metalloprotease, at 791,000 to 792,946
Atu3710
Atu3711: Atu3711 - hypothetical protein, at 793,101 to 794,432
Atu3711
Atu3712: Atu3712 - hypothetical protein, at 794,457 to 795,446
Atu3712
Atu3713: Atu3713 - omp16 protein, at 795,620 to 796,153
Atu3713
Group
Condition
Atu3709
Atu3710
Atu3711
Atu3712
Atu3713
stress
R2A with Vancomycin 0.009 mM
N.D.
N.D.
N.D.
-5.7
N.D.
in planta
Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
N.D.
N.D.
N.D.
-4.9
N.D.
in planta
Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
N.D.
N.D.
N.D.
-4.9
N.D.
stress
R2A with Ceftazidime 4 mM
N.D.
N.D.
N.D.
-4.1
N.D.
stress
R2A with Ceftriaxone hemi(heptahydrate) 0.0005 mM
N.D.
N.D.
N.D.
-3.8
N.D.
stress
R2A with Ceftazidime 4 mM
N.D.
N.D.
N.D.
-3.7
N.D.
in planta
Plant=Sorghum_NK_300; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
N.D.
N.D.
N.D.
-3.6
N.D.
stress
R2A with Cephalothin 0.9 mM
N.D.
N.D.
N.D.
-3.4
N.D.
stress
R2A with Vancomycin 0.009 mM
N.D.
N.D.
N.D.
-3.4
N.D.
in planta
Plant=Sorghum_X54_243; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
N.D.
N.D.
N.D.
-3.2
N.D.
stress
R2A with Cefoxitin 0.008 mM
N.D.
N.D.
N.D.
-3.2
N.D.
carbon source
Methyl alpha-D-glucopyranoside (C)
N.D.
N.D.
N.D.
-3.1
N.D.
nitrogen source
L-Valine (N)
N.D.
N.D.
N.D.
-2.6
N.D.
in planta
Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
N.D.
N.D.
N.D.
-2.6
N.D.
in planta
Plant=Lettuce; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days
N.D.
N.D.
N.D.
-2.5
N.D.
in planta
Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days
N.D.
N.D.
N.D.
-2.5
N.D.
in planta
Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
N.D.
N.D.
N.D.
-2.4
N.D.
carbon source
Methyl-B-D-galactopyranoside (C)
N.D.
N.D.
N.D.
-2.3
N.D.
nitrogen source
D-Alanine (N)
N.D.
N.D.
N.D.
-2.3
N.D.
stress
R2A with Ceftriaxone hemi(heptahydrate) 0.0005 mM
N.D.
N.D.
N.D.
-2.3
N.D.
in planta
Plant=Tomato; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days
N.D.
N.D.
N.D.
-2.3
N.D.
in planta
Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
N.D.
N.D.
N.D.
-2.2
N.D.
in planta
Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days
N.D.
N.D.
N.D.
-2.2
N.D.
in planta
Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days
N.D.
N.D.
N.D.
-2.2
N.D.
lb_sorghum f72 f505
LB_Sorghum F72 F505
N.D.
N.D.
N.D.
-2.2
N.D.
in planta
Plant=Sorghum_SS_20; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
N.D.
N.D.
N.D.
-2.1
N.D.
stress
R2A with m-arsenite 0.8 mM
N.D.
N.D.
N.D.
-2.1
N.D.
in planta
Plant=Cucumber; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days
N.D.
N.D.
N.D.
-2.0
N.D.
stress
R2A with Azlocillin 0.2 mM
N.D.
N.D.
N.D.
-2.0
N.D.
in planta
Plant=Sorghum_SS_20; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
N.D.
N.D.
N.D.
+2.5
N.D.
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