Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu3685 and Atu3686 are separated by 27 nucleotidesAtu3686 and Atu3687 are separated by 133 nucleotidesAtu3687 and Atu3688 are separated by 53 nucleotidesAtu3688 and Atu3689 overlap by 4 nucleotides Atu3685: Atu3685 - thioesterase, siderophore biosynthesis protein, at 759,096 to 759,842 Atu3685 Atu3686: Atu3686 - siderophore biosynthesis protein, at 759,870 to 760,763 Atu3686 Atu3687: Atu3687 - TonB-dependent receptor, at 760,897 to 763,335 Atu3687 Atu3688: Atu3688 - iron(III ABC transporter permease dicitrate ABC transporter permease, at 763,389 to 764,309 Atu3688 Atu3689: Atu3689 - iron(III ABC transporter permease dicitrate ABC transporter permease, at 764,306 to 765,355 Atu3689
Group Condition Atu3685 Atu3686 Atu3687 Atu3688 Atu3689
stress Pyrogallol 0.5 mM -0.5 -0.5 -1.2 -2.0 -1.1
in planta Plant=Tomato; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days +0.1 -0.5 -0.3 -1.8 -1.2
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days -0.3 -0.4 -0.7 -1.4 -0.8
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=1days -0.5 -0.1 -0.6 -1.4 -0.5
stress R2A with Calcium Chloride Dihydrate 87.5 mM -0.1 -0.0 -0.7 -1.1 -0.9
stress R2A with Manganese (II) chloride tetrahydrate 5 mM -0.3 -0.3 -0.7 -0.6 -0.9
stress R2A with Calcium Chloride Dihydrate 87.5 mM +0.0 -0.1 -0.7 -1.2 -0.8
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=1days -0.6 -0.1 -0.1 -1.7 -0.2
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days -0.2 -0.1 -0.4 -1.1 -0.9
stress tannic 1 mM -0.1 -0.2 -0.6 -1.1 -0.6
in planta Plant=Tomato; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days -0.1 -0.1 -0.5 -0.8 -1.2
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.4 -0.1 -0.3 -1.2 -0.6
in planta Plant=Cucumber; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.1 -0.4 -0.3 -1.1 -0.8
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=1days -0.3 -0.0 -0.6 -1.4 -0.2
stress R2A with Manganese (II) chloride tetrahydrate 5 mM +0.1 -0.3 -0.6 -0.8 -0.9
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days -0.4 -0.2 -0.6 -1.1 -0.1
lb_tobacco_leaf LB_Tobacco_Leaf -0.3 -0.2 -0.3 -1.2 -0.5
stress Pyrogallol 0.5 mM +0.2 -0.2 -0.5 -1.1 -0.8
lb_tobacco_leaf LB_Tobacco_Leaf -0.4 -0.3 -0.4 -0.7 -0.6
lb_tobacco_leaf LB_Tobacco_Leaf -0.2 -0.2 -0.5 -0.9 -0.4
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days -0.2 -0.3 -0.4 -0.9 -0.4
lb_lettuce_leaf LB_Lettuce_Leaf +0.1 -0.1 -0.6 -0.8 -0.9
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=1days -0.0 -0.3 -0.5 -0.8 -0.5
stress p-Coumaric 1.25 mM -0.1 -0.1 -0.5 -1.0 -0.5
in planta Plant=Lettuce; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days +0.0 -0.0 -0.2 -1.0 -0.9
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.1 -0.3 -0.7 -0.7 -0.5
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.0 +0.2 -0.1 -1.7 -0.3
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.5 +0.1 -0.1 -1.4 +0.1
nitrogen source DL-2-Aminobutyric (N) +0.1 +0.9 +0.3 -0.9 +0.4
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.3 +0.4 +0.1 +1.3 +0.1
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