Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu3679 and Atu3680 overlap by 4 nucleotidesAtu3680 and Atu3681 are separated by 37 nucleotidesAtu3681 and Atu3682 overlap by 4 nucleotidesAtu3682 and Atu3683 are separated by 11 nucleotides Atu3679: Atu3679 - siderophore biosynthesis protein, at 736,961 to 737,479 Atu3679 Atu3680: Atu3680 - siderophore biosynthesis protein, at 737,476 to 738,039 Atu3680 Atu3681: Atu3681 - polyketide synthase, at 738,077 to 742,510 Atu3681 Atu3682: Atu3682 - non-ribosomal peptide synthetase, siderophore biosynthesis protein, at 742,507 to 749,706 Atu3682 Atu3683: Atu3683 - peptide synthetase, siderophore biosynthesis protein, at 749,718 to 757,409 Atu3683
Group Condition Atu3679 Atu3680 Atu3681 Atu3682 Atu3683
nitrogen source L-Ornithine (N) -0.2 -0.4 -0.3 -0.4 -0.3
nitrogen source L-Ornithine (N) -0.4 -0.1 -0.3 -0.3 -0.3
stress Pyrogallol 0.5 mM -0.1 -0.3 -0.3 -0.3 -0.3
carbon source methyl-beta-D-xylopyranoside (C) -0.6 -0.1 -0.3 -0.1 -0.1
carbon source NAG (C) -0.3 -0.4 -0.2 -0.1 -0.1
carbon source Glycerol (C) -0.6 -0.2 -0.1 -0.1 -0.1
carbon source Methyl alpha-D-glucopyranoside (C) -0.4 -0.3 -0.2 -0.1 -0.1
carbon source L-(+)-Erythrulose (C) -0.3 -0.2 -0.2 -0.0 -0.2
nitrogen source Nicotinamide (N) -0.4 -0.1 -0.2 -0.2 -0.2
carbon source Rhamnogalacturonan - from potato (C) -0.3 -0.2 -0.1 -0.2 -0.2
nitrogen source Choline chloride (N) -0.3 -0.1 -0.2 -0.2 -0.2
in planta Plant=Sorghum_NK_300; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.8 +0.3 -0.2 +0.2 +0.0
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.1 -0.6 +0.3 -0.0 -0.0
in planta Plant=Sorghum_Btx_642; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.7 +0.3 +0.1 +0.1 +0.1
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.6 +0.2 +0.2 +0.1 +0.1
stress R2A with Tetracycline 0.002 mM -0.1 +0.6 -0.2 -0.1 -0.1
phage AgroPhage_C04 +0.3 -0.4 +0.2 +0.1 +0.1
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.4 +0.4 +0.2 +0.0 +0.1
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.2 -0.6 +0.3 +0.3 +0.3
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.3 -0.2 +0.1 +0.2 +0.2
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.3 +0.5 +0.3 +0.1 +0.2
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +1.1 -0.5 +0.1 +0.1 +0.1
in planta Plant=Cucumber; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.5 +0.4 +0.0 -0.0 -0.0
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.3 +0.5 -0.0 +0.1 +0.2
stress R2A with tungstate 375 mM +0.2 +0.3 +0.2 +0.2 +0.2
in planta Plant=Sorghum_NK_300; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.7 +0.2 +0.1 +0.1 -0.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.9 +0.1 -0.0 -0.0 +0.1
in planta Plant=Sorghum_X50_665; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.4 +0.2 +0.3 +0.2 +0.1
agar plate interaction control Parafilmed volatile agar plate with no fungus +1.1 +0.2 -0.1 +0.0 +0.1
in planta Plant=Sorghum_SS_20; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.4 +0.3 +0.3 +0.1 +0.2
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