Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu3638 and Atu3639 are separated by 3 nucleotidesAtu3639 and Atu3640 are separated by 2 nucleotidesAtu3640 and Atu3641 overlap by 4 nucleotidesAtu3641 and Atu3642 are separated by 13 nucleotides Atu3638: Atu3638 - hypothetical protein, at 690,379 to 691,503 Atu3638 Atu3639: Atu3639 - hypothetical protein, at 691,507 to 692,238 Atu3639 Atu3640: Atu3640 - hypothetical protein, at 692,241 to 693,821 Atu3640 Atu3641: Atu3641 - hypothetical protein, at 693,818 to 694,927 Atu3641 Atu3642: Atu3642 - vgrG protein, at 694,941 to 697,205 Atu3642
Group Condition Atu3638 Atu3639 Atu3640 Atu3641 Atu3642
stress R2A with tungstate 375 mM -0.4 N.D. -0.1 -0.3 -0.4
phage Phage 95.3 + bacteria -0.2 N.D. -0.3 -0.3 -0.4
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.2 N.D. -0.3 -0.2 -0.4
phage phage 99.2 -0.2 N.D. -0.2 -0.3 -0.2
phage phage 99.2 -0.1 N.D. -0.1 -0.4 -0.4
in planta Plant=Sorghum_X50_665; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.4 N.D. +0.1 -0.1 -0.5
in planta Plant=Sorghum_SS_20; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.2 N.D. -0.3 -0.2 -0.3
in planta Plant=Sorghum_NK_300; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.4 N.D. -0.3 +0.2 +0.2
phage AgroPhage_A07 +0.1 N.D. -0.5 -0.1 +0.2
Atjh14 -0.5 N.D. -0.3 +0.1 +0.4
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.4 N.D. +0.2 -0.1 +0.2
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.2 N.D. +0.3 -0.3 +0.2
in planta Plant=Sorghum_Btx_642; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.2 N.D. -0.2 +0.1 +0.4
in planta Plant=Sorghum_NK_300; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.0 N.D. +0.3 -0.3 +0.5
carbon source D-(-)-lyxose (C) +0.2 N.D. +0.2 -0.2 +0.4
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.1 N.D. -0.2 +0.5 +0.2
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.2 N.D. +0.3 +0.2 +0.5
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.2 N.D. +0.5 +0.3 -0.2
stress R2A with sodium fluoride 0.2 mM +0.3 N.D. +0.3 +0.2 +0.2
carbon source Methyl alpha-D-glucopyranoside (C) +0.0 N.D. +0.3 +0.3 +0.3
stress R2A with Ceftriaxone hemi(heptahydrate) 0.0005 mM +0.3 N.D. +0.1 +0.3 +0.3
carbon source D-Raffinose (C) +0.2 N.D. +0.3 +0.2 +0.4
carbon source L-Fucose (C) +0.2 N.D. +0.3 +0.2 +0.3
carbon source Asolectin from soybean (C) +0.2 N.D. +0.1 +0.1 +0.5
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.2 N.D. +0.2 +0.4 +0.2
nitrogen source D-Alanine (N) +0.2 N.D. +0.2 +0.3 +0.4
carbon source NAG (C) +0.1 N.D. +0.3 +0.2 +0.3
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.4 N.D. +0.1 +0.2 +0.4
nitrogen source DL-2-Aminobutyric (N) +0.3 N.D. +0.2 +0.3 +0.3
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.4 N.D. +0.2 +0.3 +0.2
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