Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu3619 and Atu3620 are separated by 3 nucleotidesAtu3620 and Atu3621 overlap by 11 nucleotidesAtu3621 and Atu3622 are separated by 111 nucleotidesAtu3622 and Atu3623 are separated by 68 nucleotides Atu3619: Atu3619 - hypothetical protein, at 673,177 to 673,512 Atu3619 Atu3620: Atu3620 - hypothetical protein, at 673,516 to 674,541 Atu3620 Atu3621: Atu3621 - cobyrinic acid synthase, at 674,531 to 676,435 Atu3621 Atu3622: Atu3622 - cobalamin biosynthesis protein, at 676,547 to 677,536 Atu3622 Atu3623: Atu3623 - DnaJ family molecular chaperone, at 677,605 to 678,240 Atu3623
Group Condition Atu3619 Atu3620 Atu3621 Atu3622 Atu3623
stress R2A with Rifampicin 0.0007 mM +0.4 -0.1 N.D. N.D. -5.7
carbon source DL-glyceraldehyde (C) -0.2 +0.3 N.D. N.D. -4.1
carbon source DL-glyceraldehyde (C) -0.3 +0.0 N.D. N.D. -3.6
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.8 -0.1 N.D. N.D. -2.8
phage AgroPhage_C04 -2.1 -0.2 N.D. N.D. -0.1
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.0 -0.3 N.D. N.D. -1.9
stress R2A with Rifampicin 0.0007 mM +0.4 -0.2 N.D. N.D. -2.3
in planta Plant=Sorghum_SS_20; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.4 -0.4 N.D. N.D. -1.3
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -1.1 -0.3 N.D. N.D. -0.6
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.1 +0.0 N.D. N.D. -2.0
in planta Plant=Maize; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.6 -0.0 N.D. N.D. -1.3
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.4 -0.4 N.D. N.D. -1.9
nophagecontrol No phage control -1.0 -0.2 N.D. N.D. -0.6
in planta Plant=Arabidopsis_efr; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=5days -0.8 -0.3 N.D. N.D. -0.5
phage AgroPhage_A07 -1.7 -0.1 N.D. N.D. +0.2
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +1.1 +0.2 N.D. N.D. -2.4
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.6 -0.1 N.D. N.D. -1.4
carbon source L-Sorbose (C) +0.3 +0.4 N.D. N.D. -1.4
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.8 +0.3 N.D. N.D. -1.5
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.2 +0.7 N.D. N.D. -0.9
phage AgroPhage_F10 -0.9 +0.2 N.D. N.D. +0.7
in planta Plant=Sorghum_X50_665; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +1.4 +0.0 N.D. N.D. -0.7
agar plate interaction control Parafilmed volatile agar plate with no fungus +1.4 -0.1 N.D. N.D. +0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +1.5 +0.1 N.D. N.D. -0.0
phage AgroPhage_C10 +1.0 +0.5 N.D. N.D. +0.2
phage AgroPhage_D04 +0.9 +0.8 N.D. N.D. +0.0
phage AgroPhage_E10 +1.4 -0.2 N.D. N.D. +1.0
nitrogen source DL-2-Aminobutyric (N) +2.2 -0.2 N.D. N.D. +0.5
carbon source L-ascorbate (C) +0.0 +0.2 N.D. N.D. +3.6
carbon source L-ascorbate (C) +0.5 +0.4 N.D. N.D. +3.4
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