Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu3579 and Atu3580 are separated by 13 nucleotidesAtu3580 and Atu3581 are separated by 126 nucleotidesAtu3581 and Atu3582 are separated by 4 nucleotidesAtu3582 and Atu3583 are separated by 17 nucleotides Atu3579: Atu3579 - lactoylglutathione lyase, at 634,081 to 634,497 Atu3579 Atu3580: Atu3580 - methylmalonyl-CoA mutase, at 634,511 to 636,652 Atu3580 Atu3581: Atu3581 - propionyl-coenzyme A carboxylase, alpha polypeptide, at 636,779 to 638,782 Atu3581 Atu3582: Atu3582 - hypothetical protein, at 638,787 to 639,206 Atu3582 Atu3583: Atu3583 - hypothetical protein, at 639,224 to 639,784 Atu3583
Group Condition Atu3579 Atu3580 Atu3581 Atu3582 Atu3583
carbon source Propan-1-ol (C) -5.7 -4.6 -2.7 -2.0 -2.5
carbon source Propan-1-ol (C) -4.2 -4.2 -1.9 -1.9 -2.2
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -2.7 -1.2 +0.2 -0.1 -1.1
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -1.8 -1.0 -0.3 -0.6 +0.1
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -1.2 -1.2 -0.3 -0.4 -0.4
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -2.1 -1.3 -0.2 -0.0 +0.3
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -1.9 -0.8 -0.5 +0.5 -0.3
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -1.8 -1.3 -0.1 +0.7 -0.6
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -2.4 -0.5 -0.1 +0.3 -0.1
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -1.1 -1.1 -0.3 +0.3 -0.5
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -1.6 -0.0 -0.1 -0.6 -0.0
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -1.0 -0.9 +0.0 +0.0 -0.4
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.9 -0.2 -0.1 -0.8 -0.1
in planta Plant=Sorghum_X54_243; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -1.3 -0.1 +0.1 -0.3 -0.4
in planta Plant=Sorghum_SS_20; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.1 -0.1 -0.4 -0.9 -0.5
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.9 -1.1 +0.2 +0.2 +0.0
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -1.2 -1.3 +0.0 -0.5 +1.5
phage AgroPhage_C04 -1.4 -0.0 +0.1 -0.6 +0.5
in planta Plant=Sorghum_X50_665; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -1.2 +0.3 -0.2 +0.1 -0.4
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -1.0 +0.1 -0.2 -0.5 +0.4
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -1.0 -0.3 +0.0 -0.8 +1.0
phage AgroPhage_H10 -1.3 -0.1 -0.0 +0.6 +0.1
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days -1.3 -0.3 +0.1 +0.5 +0.4
phage AgroPhage_F04 +0.6 -0.2 +0.2 +0.3 -1.4
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -1.1 -0.4 +0.1 +0.5 +0.6
agar plate interaction control Parafilmed volatile agar plate with no fungus +1.4 -0.4 +0.0 -0.5 -0.4
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.4 +0.1 +0.0 -0.0 +2.2
no phage P2L5 +1.9 -0.0 +0.0 -0.1 +0.3
stress R2A with Vancomycin 0.009 mM +1.6 +1.1 +0.3 +0.4 -0.7
stress R2A with Vancomycin 0.009 mM +0.9 +0.9 +0.3 +0.3 +0.4
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