Fitness for 5 genes in Agrobacterium fabrum C58

Add gene:

Number of genes on each side:  

Top 30 experiments (either direction), sorted by average fitness

Or view all 953 experiments or choose conditions or try the comparative fitness browser

500 ntAtu3578 and Atu3579 are separated by 167 nucleotidesAtu3579 and Atu3580 are separated by 13 nucleotidesAtu3580 and Atu3581 are separated by 126 nucleotidesAtu3581 and Atu3582 are separated by 4 nucleotides Atu3578: Atu3578 - glycerol-3-phosphate dehydrogenase, at 632,366 to 633,913 Atu3578 Atu3579: Atu3579 - lactoylglutathione lyase, at 634,081 to 634,497 Atu3579 Atu3580: Atu3580 - methylmalonyl-CoA mutase, at 634,511 to 636,652 Atu3580 Atu3581: Atu3581 - propionyl-coenzyme A carboxylase, alpha polypeptide, at 636,779 to 638,782 Atu3581 Atu3582: Atu3582 - hypothetical protein, at 638,787 to 639,206 Atu3582
Group Condition Atu3578 Atu3579 Atu3580 Atu3581 Atu3582
carbon source Propan-1-ol (C) -0.1 -5.7 -4.6 -2.7 -2.0
carbon source Propan-1-ol (C) +0.1 -4.2 -4.2 -1.9 -1.9
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.4 -2.7 -1.2 +0.2 -0.1
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.3 -2.1 -1.3 -0.2 -0.0
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.7 -1.8 -1.0 -0.3 -0.6
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.1 -1.9 -0.8 -0.5 +0.5
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.5 -1.2 -1.2 -0.3 -0.4
in planta Plant=Sorghum_X54_243; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.9 -1.3 -0.1 +0.1 -0.3
stress R2A with Ceftriaxone hemi(heptahydrate) 0.0005 mM -1.0 -0.7 -0.3 -0.1 -0.4
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.2 -2.4 -0.5 -0.1 +0.3
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.0 -1.8 -1.3 -0.1 +0.7
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.6 -1.2 -1.3 +0.0 -0.5
phage AgroPhage_C04 -0.4 -1.4 -0.0 +0.1 -0.6
phage Phage 99.1 + bacteria -0.9 -0.9 -0.0 -0.1 -0.4
phage AgroPhage_C10 -2.1 -0.1 -0.1 +0.1 -0.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.8 -0.9 -0.3 -0.1 +0.1
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.3 -1.0 -0.3 +0.0 -0.8
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.7 -1.6 -0.0 -0.1 -0.6
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.2 -1.1 -0.4 +0.1 +0.5
phage AgroPhage_H10 -0.2 -1.3 -0.1 -0.0 +0.6
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days +0.0 -1.3 -0.3 +0.1 +0.5
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.6 -0.9 -1.1 +0.2 +0.2
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +1.2 -1.1 -1.1 -0.3 +0.3
phage AgroPhage_F10 +0.7 -1.3 -0.2 -0.1 +0.3
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.8 -0.1 -1.1 -0.1 +0.3
in planta Plant=Sorghum_SS_20; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -1.3 +1.1 -0.1 -0.1 +0.1
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.0 +1.4 -0.4 +0.0 -0.5
no phage P2L5 +0.2 +1.9 -0.0 +0.0 -0.1
stress R2A with Vancomycin 0.009 mM -0.3 +0.9 +0.9 +0.3 +0.3
stress R2A with Vancomycin 0.009 mM -0.5 +1.6 +1.1 +0.3 +0.4
remove
Atu3578
plot		 remove
Atu3579
plot		 remove
Atu3580		 remove
Atu3581
plot		 remove
Atu3582
plot