Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu3572 and Atu3573 are separated by 28 nucleotidesAtu3573 and Atu3574 are separated by 202 nucleotidesAtu3574 and Atu3575 are separated by 18 nucleotidesAtu3575 and Atu3576 are separated by 80 nucleotides Atu3572: Atu3572 - transcriptional regulator, at 626,666 to 627,103 Atu3572 Atu3573: Atu3573 - hypothetical protein, at 627,132 to 627,431 Atu3573 Atu3574: Atu3574 - xylose ABC transporter ATPase, at 627,634 to 628,416 Atu3574 Atu3575: Atu3575 - xylose ABC transporter permease, at 628,435 to 629,748 Atu3575 Atu3576: Atu3576 - xylose ABC transporter substrate-binding protein, at 629,829 to 630,869 Atu3576
Group Condition Atu3572 Atu3573 Atu3574 Atu3575 Atu3576
carbon source D-Glucosamine Hydrochloride (C) -0.2 +0.0 -1.7 -1.6 -2.0
carbon source D-Glucosamine Hydrochloride (C) -0.5 +0.1 -1.8 -1.5 -1.7
carbon source D-Glucose (C) -0.3 -0.1 -1.4 -1.4 -1.5
carbon source D-Glucose (C) -0.4 +0.1 -1.3 -1.4 -1.5
carbon source D-Glucose (C) -0.5 +0.0 -1.3 -1.2 -1.5
carbon source D-Glucose (C) -0.5 +0.1 -1.1 -1.0 -1.5
carbon source NAG (C) -0.9 -0.1 -1.1 -0.9 -0.9
carbon source D-Glucose (C) -0.3 -0.0 -1.1 -1.2 -1.0
carbon source NAG (C) -0.7 -0.1 -0.9 -1.2 -0.6
carbon source D-Glucose (C) -0.3 -0.0 -1.0 -1.1 -0.9
carbon source NAG (C) -1.2 +0.1 -0.4 -0.5 -0.6
carbon source NAG (C) -1.0 +0.1 -0.5 -0.6 -0.5
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -1.0 -0.6 +0.3 -0.5 -0.4
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.6 +0.3 -0.1 -1.3 -0.3
phage AgroPhage_E10 +0.0 -0.6 -0.8 -0.5 -0.1
stress Chloramphenicol 12.5 ug/mL -0.8 -0.5 -0.5 -0.4 +0.5
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.4 -0.8 -0.5 -0.2 +0.2
nophagecontrol No phage control -0.3 +0.1 -0.1 -1.2 -0.2
in planta Plant=Sorghum_X50_665; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.9 -0.1 -0.3 +0.2 -0.4
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -1.1 -0.1 -0.3 -0.3 +0.4
Atjh14 +0.2 +0.2 -0.3 -0.7 -0.8
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.7 -0.3 +0.1 -1.7 -0.2
in planta Plant=Sorghum_X50_665; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.7 +0.3 -0.6 +0.2 -0.2
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.7 -0.5 +0.1 -0.4 +0.5
stress R2A with Polymyxin B sulfate 0.00075 mM -1.1 -0.1 -0.1 +0.3 +0.2
in planta Plant=Sorghum_Btx_430; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.9 +0.6 -0.4 +0.6 -0.3
phage AgroPhage_D10 +0.6 -0.7 +0.1 -0.5 +0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.7 -0.5 +0.5 +0.5 +0.2
phage AgroPhage_C10 -0.2 +0.6 +0.4 -0.3 -0.3
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.1 -0.1 +0.4 +1.1 +0.2
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