Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu3530 and Atu3531 are separated by 17 nucleotidesAtu3531 and Atu3532 are separated by 22 nucleotidesAtu3532 and Atu3533 are separated by 151 nucleotidesAtu3533 and Atu3534 are separated by 139 nucleotides Atu3530: Atu3530 - mannitol dehydrogenase, at 579,312 to 580,784 Atu3530 Atu3531: Atu3531 - 3-oxoacyl-ACP reductase, at 580,802 to 581,542 Atu3531 Atu3532: Atu3532 - GntR family transcriptional regulator, at 581,565 to 582,314 Atu3532 Atu3533: Atu3533 - sugar ABC transporter substrate-binding protein, at 582,466 to 583,506 Atu3533 Atu3534: Atu3534 - ABC transporter permease, at 583,646 to 584,686 Atu3534
Group Condition Atu3530 Atu3531 Atu3532 Atu3533 Atu3534
carbon source D-(-)-lyxose (C) -0.5 -0.6 -0.1 -0.5 -0.6
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.3 -0.4 -1.0 -0.4 +0.1
carbon source D-(-)-lyxose (C) -0.3 -0.4 +0.1 -0.5 -0.7
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.1 -0.1 -0.6 -0.1 -0.8
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.3 -0.1 -0.6 -0.2 -0.3
carbon source D-Saccharic potassium salt (C) +0.2 -0.3 -0.8 -0.2 -0.5
phage AgroPhage_D10 -0.4 -0.4 -0.3 -0.1 -0.3
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.1 -0.4 -1.1 -0.2 +0.0
stress R2A with m-arsenite 0.8 mM +0.0 +0.2 -1.5 +0.0 -0.0
carbon source methyl 3-keto-a-D-glucopyranoside (C) +0.1 +0.1 -1.1 -0.1 -0.3
stress R2A with m-arsenite 0.8 mM +0.2 -0.1 -0.9 +0.1 -0.3
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.6 -0.5 -1.4 +0.3 +0.2
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.2 -0.0 -1.1 +0.3 -0.2
carbon source D-Saccharic potassium salt (C) +0.2 +0.3 -1.4 +0.1 +0.1
in planta Plant=Sorghum_X54_243; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.5 -0.3 +0.5 -0.2 -0.0
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.3 +0.5 -1.2 +0.0 +0.6
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.2 -0.5 -0.2 +0.3 -0.2
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.2 +0.6 -0.9 -0.3 +0.1
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.2 +0.8 -0.7 +0.1 +0.2
carbon source Xylitol (C) +0.1 -0.1 +1.2 -0.1 -0.1
nitrogen source DL-2-Aminobutyric (N) -0.1 +0.1 +1.1 -0.4 +0.4
stress R2A with molybdate 400 mM +0.2 -0.2 +1.0 -0.0 +0.3
carbon source Xylitol (C) +0.2 -0.1 +1.5 -0.1 -0.1
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.4 +0.3 +0.5 +0.0 +0.3
carbon source D-Ribose (C) +0.1 +0.0 +2.2 -0.1 -0.2
carbon source L-ascorbate (C) +0.0 +0.0 +2.4 -0.0 -0.2
carbon source D-Ribose (C) +0.2 +0.0 +2.2 -0.0 -0.1
carbon source L-ascorbate (C) +0.1 +0.1 +2.4 +0.0 -0.2
carbon source L-Sorbose (C) +0.2 -0.1 +2.7 -0.2 -0.2
carbon source L-Sorbose (C) +0.1 +0.1 +2.9 -0.0 -0.1
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