Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu3507 and Atu3508 are separated by 297 nucleotidesAtu3508 and Atu3509 are separated by 85 nucleotidesAtu3509 and Atu3510 overlap by 4 nucleotidesAtu3510 and Atu3511 are separated by 24 nucleotides Atu3507: Atu3507 - hypothetical protein, at 557,462 to 558,241 Atu3507 Atu3508: Atu3508 - 3-demethylubiquinone-9 3-methyltransferase, at 558,539 to 559,291 Atu3508 Atu3509: Atu3509 - hypothetical protein, at 559,377 to 559,805 Atu3509 Atu3510: Atu3510 - amidohydrolase, at 559,802 to 560,662 Atu3510 Atu3511: Atu3511 - glutaredoxin, at 560,687 to 560,989 Atu3511
Group Condition Atu3507 Atu3508 Atu3509 Atu3510 Atu3511
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.9 N.D. -0.7 -2.5 +0.2
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.1 N.D. -0.6 -1.4 -0.4
in planta Plant=Sorghum_NK_300; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.5 N.D. -0.2 -0.9 -0.7
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.5 N.D. -0.9 -1.7 +0.0
nophagecontrol No phage control -0.8 N.D. +0.2 -0.8 -0.5
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.3 N.D. +0.5 -1.4 -0.6
in planta Plant=Lettuce; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days -0.9 N.D. +0.3 -0.3 -0.6
stress R2A with m-arsenite 0.8 mM -0.3 N.D. +0.3 +0.1 -1.4
nophagecontrol No phage control +0.4 N.D. +0.0 -0.4 -1.4
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.8 N.D. +0.8 -1.3 -1.5
no phage P4L5 -0.3 N.D. +0.0 +0.4 -1.4
carbon source D-Saccharic potassium salt (C) -0.7 N.D. -0.7 +0.5 -0.2
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.8 N.D. -0.1 -1.5 -0.4
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.6 N.D. +0.1 -1.1 -0.8
no phage P3L4 -0.2 N.D. -0.2 +0.5 -1.2
in planta Plant=Sorghum_Btx_430; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.3 N.D. -0.4 -1.2 +0.4
in planta Plant=Sorghum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=5days +0.4 N.D. -0.2 -1.3 +0.1
phage AgroPhage_D04 -0.1 N.D. -0.0 -1.3 +0.6
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.1 N.D. -0.4 +0.9 -1.1
in planta Plant=Sorghum_X50_665; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.3 N.D. +0.2 -2.0 +0.8
phage AgroPhage_D10 +0.6 N.D. +0.2 -1.4 +0.4
in planta Plant=Wheat; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.5 N.D. -0.5 +0.6 +0.6
phage AgroPhage_E10 +0.4 N.D. +0.7 -0.9 +0.6
carbon source methyl-alpha-D-xylopyranoside (C) +0.4 N.D. -0.5 +0.6 +0.5
phage AgroPhage_F04 +0.5 N.D. +0.4 -0.5 +0.8
agar plate interaction control Parafilmed volatile agar plate with no fungus +1.5 N.D. +0.6 -0.8 +0.4
phage AgroPhage_F10 +0.7 N.D. +0.8 +0.5 +0.1
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +1.2 N.D. +0.4 -0.1 +0.8
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.9 N.D. +0.4 +0.4 +0.6
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.5 N.D. +1.0 +0.8 +0.4
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