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Cofit
Protein
Homologs
Fitness for 5 genes in
Agrobacterium fabrum C58
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Number of genes on each side:
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Atu3482 and Atu3483 overlap by 4 nucleotides
Atu3483 and Atu3484 are separated by 34 nucleotides
Atu3484 and Atu3485 are separated by 50 nucleotides
Atu3485 and Atu3486 are separated by 200 nucleotides
Atu3482: Atu3482 - pantoate--beta-alanine ligase, at 531,140 to 532,018
Atu3482
Atu3483: Atu3483 - 3-methyl-2-oxobutanoate hydroxymethyltransferase, at 532,015 to 532,854
Atu3483
Atu3484: Atu3484 - hypothetical protein, at 532,889 to 534,181
Atu3484
Atu3485: Atu3485 - short chain dehydrogenase, at 534,232 to 536,328
Atu3485
Atu3486: Atu3486 - DeoR family transcriptional regulator, at 536,529 to 537,359
Atu3486
Group
Condition
Atu3482
Atu3483
Atu3484
Atu3485
Atu3486
carbon source
L-Rhamnose (C)
-4.5
-5.7
-2.8
-4.6
-2.9
carbon source
L-Rhamnose (C)
-4.1
-4.5
-2.8
-4.2
-1.5
carbon source
Protocatechuic Acid (C)
-6.4
-7.8
-0.0
-0.1
-0.7
carbon source
Protocatechuic Acid (C)
-7.2
-7.0
-0.0
-0.0
-0.6
carbon source
D-Mannose (C)
-7.4
-5.8
+0.0
-0.5
-1.0
carbon source
D-Quinic (C)
-7.0
-6.8
+0.2
-0.5
+0.0
carbon source
D-Glucose (C)
-6.2
-6.8
-0.0
-0.5
-0.5
carbon source
L-Galactose (C)
-5.4
-5.7
+0.1
-1.3
-1.4
carbon source
D-Mannose (C)
-6.6
-6.2
+0.1
-0.4
-0.5
carbon source
D-Glucose-6-Phosphate (C)
-5.6
-6.7
+0.0
-0.7
-0.6
carbon source
L-Galactose (C)
-4.6
-6.1
+0.2
-0.9
-2.1
carbon source
D-Cellobiose (C)
-6.5
-5.9
+0.0
-0.4
-0.7
carbon source
NAG (C)
-5.1
-6.2
+0.1
-1.8
-0.3
carbon source
acetate (C)
-5.4
-6.0
+0.0
-0.7
-1.2
carbon source
m-Inositol (C)
-4.2
-4.4
-0.1
-1.0
-3.5
carbon source
Sucrose (C)
-5.7
-6.6
+0.1
-0.6
-0.4
carbon source
D-Mannitol (C)
-6.5
-5.6
-0.1
-0.6
-0.4
carbon source
D-Mannitol (C)
-6.9
-5.2
+0.1
-0.6
-0.4
carbon source
NAG (C)
-6.1
-4.6
+0.3
-1.5
-1.0
carbon source
D-Galactose (C)
-5.2
-6.1
+0.0
-0.8
-0.8
carbon source
D-Glucuronic gamma lactone (C)
-6.9
-5.6
+0.2
-0.3
-0.3
carbon source
D-Fructose (C)
-6.3
-5.6
-0.1
-0.4
-0.3
carbon source
m-Inositol (C)
-4.6
-4.7
-0.1
-1.0
-2.1
carbon source
D-glutamine (C)
-3.5
-4.4
+0.0
-0.6
-3.7
carbon source
Ribitol (C)
-6.8
-4.9
+0.2
-0.5
-0.1
carbon source
D-Ribose (C)
-6.3
-5.6
+0.0
+1.1
+0.2
carbon source
L-Sorbose (C)
-6.2
-4.6
+0.1
+1.8
-1.4
carbon source
gluconate (C)
-5.8
-4.5
-0.1
-0.7
+1.2
carbon source
L-Sorbose (C)
-5.6
-4.6
+0.0
+1.9
-0.8
carbon source
L-ascorbate (C)
-4.1
-4.3
+0.0
+2.5
-2.5
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