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Cofit
Protein
Homologs
Fitness for 5 genes in
Agrobacterium fabrum C58
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Atu3480 and Atu3481 overlap by 11 nucleotides
Atu3481 and Atu3482 are separated by 140 nucleotides
Atu3482 and Atu3483 overlap by 4 nucleotides
Atu3483 and Atu3484 are separated by 34 nucleotides
Atu3480: Atu3480 - hydroxymethylglutaryl-CoA lyase, at 529,307 to 530,233
Atu3480
Atu3481: Atu3481 - enoyl-CoA hydratase, at 530,223 to 530,999
Atu3481
Atu3482: Atu3482 - pantoate--beta-alanine ligase, at 531,140 to 532,018
Atu3482
Atu3483: Atu3483 - 3-methyl-2-oxobutanoate hydroxymethyltransferase, at 532,015 to 532,854
Atu3483
Atu3484: Atu3484 - hypothetical protein, at 532,889 to 534,181
Atu3484
Group
Condition
Atu3480
Atu3481
Atu3482
Atu3483
Atu3484
carbon source
Protocatechuic Acid (C)
+0.1
-0.2
-7.2
-7.0
-0.0
carbon source
Protocatechuic Acid (C)
-0.1
+0.1
-6.4
-7.8
-0.0
carbon source
D-Quinic (C)
-0.1
-0.0
-7.0
-6.8
+0.2
carbon source
L-Rhamnose (C)
-0.1
-0.4
-4.5
-5.7
-2.8
carbon source
D-Glucose (C)
-0.0
+0.0
-6.2
-6.8
-0.0
carbon source
D-Mannose (C)
+0.2
+0.2
-7.3
-5.8
+0.1
carbon source
D-Glucose-6-Phosphate (C)
+0.1
-0.1
-5.6
-6.7
+0.0
carbon source
D-Mannose (C)
+0.1
+0.3
-6.6
-6.2
+0.1
carbon source
D-Cellobiose (C)
+0.1
+0.1
-6.5
-5.9
+0.0
carbon source
acetate (C)
-0.4
-0.3
-5.4
-6.0
+0.0
carbon source
D-Mannitol (C)
+0.1
-0.0
-6.5
-5.6
-0.1
carbon source
D-Fructose (C)
-0.1
-0.0
-6.3
-5.6
-0.1
carbon source
D-Glucuronic gamma lactone (C)
+0.1
+0.0
-6.9
-5.6
+0.2
carbon source
Sucrose (C)
-0.0
+0.2
-5.7
-6.6
+0.1
carbon source
D-Ribose (C)
+0.1
-0.0
-6.3
-5.6
+0.0
carbon source
L-Rhamnose (C)
-0.2
-0.2
-4.1
-4.5
-2.8
carbon source
D-Mannitol (C)
+0.1
+0.1
-6.9
-5.2
+0.1
carbon source
D-Galactose (C)
-0.1
+0.0
-5.2
-6.1
+0.0
carbon source
Ribitol (C)
-0.0
+0.3
-6.3
-5.4
+0.1
carbon source
Ribitol (C)
+0.1
+0.1
-6.8
-4.9
+0.2
carbon source
NAG (C)
+0.2
-0.2
-5.1
-6.2
+0.1
carbon source
Xylobiose (C)
-0.2
+0.1
-5.7
-5.3
+0.1
carbon source
D-Glucuronic gamma lactone (C)
+0.1
+0.3
-5.2
-6.0
+0.2
carbon source
L-Galactose (C)
+0.0
+0.3
-5.4
-5.7
+0.1
carbon source
L-Galactose (C)
+0.2
-0.1
-4.6
-6.1
+0.2
carbon source
Xylobiose (C)
+0.2
+0.3
-5.4
-5.6
+0.0
carbon source
D-Glucose-6-Phosphate (C)
-0.2
+0.4
-5.6
-5.1
+0.1
carbon source
NAG (C)
+0.2
-0.0
-6.1
-4.6
+0.3
carbon source
D-Quinic (C)
+0.2
+0.3
-5.9
-4.7
+0.0
carbon source
L-Arabinose (C)
+0.2
+0.3
-5.7
-4.8
+0.2
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