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Cofit
Protein
Homologs
Fitness for 5 genes in
Agrobacterium fabrum C58
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Atu3478 and Atu3479 are separated by 7 nucleotides
Atu3479 and Atu3480 are separated by 1 nucleotides
Atu3480 and Atu3481 overlap by 11 nucleotides
Atu3481 and Atu3482 are separated by 140 nucleotides
Atu3478: Atu3478 - 3-methylcrotonoyl-CoA carboxylase beta subunit, at 525,705 to 527,306
Atu3478
Atu3479: Atu3479 - 3-methylcrotonyl-CoA carboxylase subunit alpha, at 527,314 to 529,305
Atu3479
Atu3480: Atu3480 - hydroxymethylglutaryl-CoA lyase, at 529,307 to 530,233
Atu3480
Atu3481: Atu3481 - enoyl-CoA hydratase, at 530,223 to 530,999
Atu3481
Atu3482: Atu3482 - pantoate--beta-alanine ligase, at 531,140 to 532,018
Atu3482
Group
Condition
Atu3478
Atu3479
Atu3480
Atu3481
Atu3482
carbon source
Protocatechuic Acid (C)
-0.1
-0.2
+0.1
-0.2
-7.2
carbon source
D-Quinic (C)
-0.0
-0.1
-0.1
-0.0
-7.0
carbon source
D-Glucuronic gamma lactone (C)
+0.0
-0.1
+0.1
+0.0
-6.9
carbon source
D-Mannose (C)
+0.1
+0.1
+0.2
+0.2
-7.4
carbon source
Ribitol (C)
-0.0
-0.0
+0.1
+0.1
-6.8
carbon source
D-Fructose (C)
+0.0
-0.1
-0.1
-0.0
-6.3
carbon source
D-Mannitol (C)
+0.1
+0.1
+0.1
+0.1
-6.9
carbon source
acetate (C)
-0.0
-0.2
-0.4
-0.3
-5.4
carbon source
D-Mannitol (C)
-0.0
+0.0
+0.1
-0.0
-6.5
carbon source
Protocatechuic Acid (C)
-0.0
+0.0
-0.1
+0.1
-6.4
carbon source
D-Ribose (C)
-0.0
+0.0
+0.1
-0.0
-6.3
carbon source
D-Glucose (C)
-0.1
-0.0
-0.0
+0.0
-6.2
carbon source
L-Sorbose (C)
-0.2
-0.1
+0.3
+0.0
-6.2
carbon source
D-Cellobiose (C)
+0.2
+0.0
+0.1
+0.1
-6.5
carbon source
methyl-beta-D-xylopyranoside (C)
+0.1
-0.1
-0.0
+0.1
-6.2
carbon source
D-Glucose (C)
+0.1
-0.1
+0.0
-0.0
-6.0
carbon source
Ribitol (C)
+0.1
+0.0
-0.0
+0.3
-6.3
carbon source
D-Mannose (C)
+0.2
+0.1
+0.1
+0.3
-6.6
carbon source
NAG (C)
-0.0
+0.1
+0.2
-0.0
-6.1
carbon source
D-Galactose (C)
+0.1
+0.1
-0.1
-0.1
-5.8
carbon source
gluconate (C)
+0.0
-0.0
+0.1
-0.1
-5.8
carbon source
Xylobiose (C)
+0.1
-0.0
-0.2
+0.1
-5.7
carbon source
D-Glucose-6-Phosphate (C)
-0.0
+0.1
+0.1
-0.1
-5.6
carbon source
D-Quinic (C)
+0.0
-0.1
+0.2
+0.3
-5.9
carbon source
Sucrose (C)
+0.1
-0.0
-0.0
+0.2
-5.7
carbon source
L-Sorbose (C)
+0.2
-0.1
-0.1
+0.2
-5.6
carbon source
L-Arabinose (C)
-0.1
+0.0
+0.2
+0.3
-5.7
carbon source
D-Glucose-6-Phosphate (C)
+0.1
+0.1
-0.2
+0.4
-5.6
carbon source
Xylobiose (C)
+0.2
-0.1
+0.2
+0.3
-5.4
carbon source
D-Galacturonic Acid (C)
+0.2
+0.0
+0.0
+0.4
-5.4
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