Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu3475 and Atu3476 are separated by 108 nucleotidesAtu3476 and Atu3477 are separated by 79 nucleotidesAtu3477 and Atu3478 are separated by 8 nucleotidesAtu3478 and Atu3479 are separated by 7 nucleotides Atu3475: Atu3475 - acetyl-CoA C-acetyltransferase, at 522,624 to 523,862 Atu3475 Atu3476: Atu3476 - AsnC family transcriptional regulator, at 523,971 to 524,444 Atu3476 Atu3477: Atu3477 - acyl-CoA dehydrogenase, at 524,524 to 525,696 Atu3477 Atu3478: Atu3478 - 3-methylcrotonoyl-CoA carboxylase beta subunit, at 525,705 to 527,306 Atu3478 Atu3479: Atu3479 - 3-methylcrotonyl-CoA carboxylase subunit alpha, at 527,314 to 529,305 Atu3479
Group Condition Atu3475 Atu3476 Atu3477 Atu3478 Atu3479
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -1.3 -1.4 -0.7 -0.6 -1.0
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -1.1 -2.1 -0.3 -0.6 -0.8
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.6 -0.9 -0.4 -1.6 -1.3
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -1.2 +0.0 -0.5 -1.5 -1.0
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.8 -0.9 -0.2 -1.3 -0.8
lb_ntabacum_leaf LB_Ntabacum_leaf -0.6 -0.7 -0.5 -0.9 -1.3
lb LB -1.0 -0.6 -0.2 -0.6 -1.0
lb LB -0.9 -0.5 -0.4 -0.7 -0.6
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.4 -0.7 -0.4 -0.4 -1.1
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.8 -0.8 +0.1 -0.6 -0.9
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.3 -0.3 -0.2 -1.0 -1.3
lb_ntabacum_leaf LB_Ntabacum_leaf -0.7 -0.9 -0.2 -0.6 -0.6
lb_lettuce_leaf LB_Lettuce_Leaf -0.4 -0.5 -0.4 -0.9 -0.6
lb_tobacco_leaf LB_Tobacco_Leaf -0.4 -0.5 -0.3 -0.5 -1.0
lb_cucumber_cotlyden LB_cucumber_cotlyden -0.3 -0.7 -0.3 -0.7 -0.6
lb_lettuce_leaf LB_Lettuce_Leaf -0.0 -0.4 -0.4 -0.9 -0.9
lb_cucumber_cotlyden LB_cucumber_cotlyden -0.2 -0.2 -0.2 -0.8 -1.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.5 +0.1 -0.4 -0.9 -0.7
lb_ntabacum_leaf LB_Ntabacum_leaf -0.5 -0.3 -0.4 -0.4 -0.8
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.8 -0.2 -0.4 -0.5 -0.5
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.2 +0.0 -0.7 -0.7 -0.7
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.3 -0.6 -0.2 -0.4 -0.6
stress Rosmarinic 5 mM -0.3 -0.4 -0.3 -0.7 -0.4
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.5 -1.9 +0.5 -0.3 -0.3
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.4 +0.4 -0.2 -0.4 -0.9
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.6 +0.9 +0.0 -0.2 -1.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.6 +0.5 -0.4 -0.3 -0.4
in planta Plant=Sorghum_SS_20; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.2 +0.6 -0.7 -0.2 -0.5
phage AgroPhage_C10 -0.4 +0.9 -0.4 -0.5 -0.2
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.5 -1.0 +0.4 +0.1 +0.6
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