Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu3469 and Atu3470 overlap by 28 nucleotidesAtu3470 and Atu3471 are separated by 194 nucleotidesAtu3471 and Atu3472 are separated by 2 nucleotidesAtu3472 and Atu3473 are separated by 3 nucleotides Atu3469: Atu3469 - phosphoglyceromutase, at 516,026 to 517,543 Atu3469 Atu3470: Atu3470 - hypothetical protein, at 517,516 to 517,710 Atu3470 Atu3471: Atu3471 - branched-chain alpha-keto acid dehydrogenase subunit E2, at 517,905 to 519,182 Atu3471 Atu3472: Atu3472 - 2-oxoisovalerate dehydrogenase subunit beta, at 519,185 to 520,198 Atu3472 Atu3473: Atu3473 - 2-oxoisovalerate dehydrogenase subunit alpha, at 520,202 to 521,440 Atu3473
Group Condition Atu3469 Atu3470 Atu3471 Atu3472 Atu3473
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -3.6 N.D. -1.7 -1.5 -0.6
carbon source Protocatechuic Acid (C) -5.6 N.D. -0.1 -0.2 -0.1
carbon source D-Mannitol (C) -5.4 N.D. -0.2 -0.2 -0.2
carbon source succinate (C) -5.4 N.D. -0.1 -0.2 -0.1
carbon source L-Arabinose (C) -5.5 N.D. -0.0 -0.1 -0.1
carbon source D-Mannose (C) -5.2 N.D. -0.2 -0.4 +0.0
carbon source D-Glucose (C) -5.5 N.D. -0.2 -0.1 -0.0
carbon source Protocatechuic Acid (C) -5.4 N.D. -0.1 -0.0 -0.2
carbon source succinate (C) -5.3 N.D. -0.1 -0.2 -0.1
carbon source palatinose (C) -4.9 N.D. -0.2 -0.2 -0.3
nitrogen source L-Proline (N) -4.9 N.D. -0.1 -0.3 -0.3
carbon source D-Trehalose (C) -5.2 N.D. -0.1 -0.2 -0.1
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -2.0 N.D. -1.3 -0.4 -1.8
carbon source L-Arabinose (C) -5.4 N.D. -0.1 -0.2 +0.1
nitrogen source 4-Aminobutyric (N) -5.0 N.D. -0.2 -0.1 -0.2
nitrogen source L-Alanine (N) -5.2 N.D. -0.1 -0.1 +0.0
stress R2A with Nalidixic 0.02 mM -4.4 N.D. -0.5 -0.1 -0.5
nitrogen source L-Glutamine (N) -5.1 N.D. +0.0 -0.3 -0.1
carbon source Maltitol (C) -5.2 N.D. -0.0 -0.1 -0.2
carbon source D-Galacturonic Acid (C) -4.9 N.D. -0.2 -0.5 +0.2
nitrogen source L-Serine (N) -4.9 N.D. -0.0 -0.4 +0.0
stress Nerol 1.25 mM -4.5 N.D. -0.2 -0.4 -0.3
nitrogen source L-Serine (N) -5.0 N.D. +0.1 -0.5 +0.2
carbon source palatinose (C) -5.3 N.D. +0.1 +0.0 -0.0
carbon source L-ascorbate (C) -4.9 N.D. +0.0 -0.3 +0.1
nitrogen source D-Alanine (N) -5.2 N.D. +0.1 -0.0 -0.0
nitrogen source L-Proline (N) -4.9 N.D. -0.0 +0.2 -0.3
nitrogen source Ammonium chloride (N) -5.1 N.D. -0.0 +0.2 +0.1
carbon source Lactulose (C) -5.0 N.D. -0.1 +0.3 +0.0
carbon source D-Glucuronic gamma lactone (C) -4.9 N.D. +0.0 +0.4 +0.1
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