Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu3451 and Atu3453 are separated by 424 nucleotidesAtu3453 and Atu3454 are separated by 6 nucleotidesAtu3454 and Atu3455 are separated by 81 nucleotidesAtu3455 and Atu3456 are separated by 217 nucleotides Atu3451: Atu3451 - monooxygenase, at 499,522 to 500,550 Atu3451 Atu3453: Atu3453 - isomerase/lactonizing enzyme, at 500,975 to 502,123 Atu3453 Atu3454: Atu3454 - arylesterase, at 502,130 to 502,759 Atu3454 Atu3455: Atu3455 - oligopeptide ABC transporter substrate-binding protein, at 502,841 to 504,439 Atu3455 Atu3456: Atu3456 - ABC transporter permease, at 504,657 to 505,415 Atu3456
Group Condition Atu3451 Atu3453 Atu3454 Atu3455 Atu3456
carbon source D-Galacturonic Acid (C) +0.1 -1.7 -0.1 +0.1 -0.2
carbon source D-Galacturonic Acid (C) +0.4 -1.5 -0.2 -0.2 -0.1
in planta Plant=Sorghum_X54_243; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.2 -0.5 -0.6 +0.1 +0.0
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -1.0 +0.0 +0.1 -0.0 -0.1
in planta Plant=Sorghum_Btx_642; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.3 +0.0 -0.7 -0.1 -0.3
phage AgroPhage_D10 -0.3 -0.2 +0.1 +0.4 -0.6
stress R2A with m-arsenite 0.8 mM -0.2 +0.1 -0.3 +0.3 -0.4
stress R2A with tungstate 375 mM +0.2 -0.0 +0.1 +0.2 -0.9
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.7 -0.3 +0.1 -0.3 -0.4
no phage P4L5 +0.3 -0.5 +0.3 -0.0 -0.2
carbon source 2-6-dihydroxybenzoic (C) -0.4 -0.1 +0.3 +0.3 -0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.2 +0.3 -0.3 -0.3 +0.5
stress Streptomycin 200 ug/mL -0.3 +0.2 -0.1 +0.4 -0.2
Atjh10 +0.6 +0.2 -0.6 -0.0 -0.1
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.2 -0.5 +0.4 +0.3 +0.2
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.7 -0.3 +0.2 -0.2 -0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.2 +0.1 -0.3 +0.5 -0.3
in planta Plant=Sorghum_Btx_642; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.3 -0.3 +0.1 -0.3 +0.6
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.2 +0.4 +0.2 -0.3 -0.2
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.2 -0.4 +0.2 +0.2 +0.6
phage AgroPhage_D04 +0.5 +0.5 -0.0 -0.1 -0.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.2 -0.0 +0.2 -0.3 +0.5
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.7 +0.4 +0.3 +0.4 +0.2
phage phage 99.2 +0.4 -0.3 +0.2 +0.3 +0.1
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.8 -0.3 +0.0 +0.5 -0.2
in planta Plant=Sorghum_SS_20; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.5 +0.5 +0.0 +0.0 +0.3
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.6 +0.3 +0.2 +0.5 -0.0
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.3 +1.0 +0.6 -0.3 -0.0
carbon source Rhamnogalacturonan - from potato (C) -0.1 +0.5 +0.5 +0.7 +0.7
carbon source Rhamnogalacturonan - from potato (C) +0.2 +0.7 +0.7 +0.8 +0.7
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