Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu3445 and Atu3446 are separated by 93 nucleotidesAtu3446 and Atu3447 overlap by 10 nucleotidesAtu3447 and Atu3448 are separated by 7 nucleotidesAtu3448 and Atu3450 are separated by 347 nucleotides Atu3445: Atu3445 - hippurate hydrolase, at 493,374 to 494,573 Atu3445 Atu3446: Atu3446 - monooxygenase, at 494,667 to 495,836 Atu3446 Atu3447: Atu3447 - hypothetical protein, at 495,827 to 496,720 Atu3447 Atu3448: Atu3448 - dibenzothiophene desulfurization protein B, at 496,728 to 497,780 Atu3448 Atu3450: Atu3450 - nitrilotriacetate monooxygenase, at 498,128 to 499,435 Atu3450
Group Condition Atu3445 Atu3446 Atu3447 Atu3448 Atu3450
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.1 -0.7 -0.4 -0.3 -0.2
in planta Plant=Sorghum_Btx_642; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.1 -1.1 -0.2 -0.3 -0.1
nitrogen source DL-2-Aminobutyric (N) +0.1 -0.7 -0.9 -0.2 +0.1
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.4 -0.6 -0.5 -0.4 +0.5
in planta Plant=Sorghum_SS_20; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.4 +0.2 -0.7 -0.1 -0.3
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.3 -0.3 -0.0 -0.6 -0.5
in planta Plant=Sorghum_X50_665; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.4 -0.2 -0.2 -1.0 -0.1
phage AgroPhage_F04 -0.3 -0.8 -0.1 +0.3 -0.1
in planta Plant=Sorghum_Btx_642; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.0 +0.5 -1.0 -0.4 -0.1
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.1 -0.6 +0.2 -0.2 -0.3
phage AgroPhage_E10 -0.1 -0.0 -0.4 -0.6 +0.6
phage AgroPhage_E04 +0.1 +0.5 -0.2 -0.6 -0.3
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.0 -0.9 -0.0 +0.4 +0.1
phage AgroPhage_C04 -0.1 +0.3 -0.6 +0.3 -0.1
carbon source D-Saccharic potassium salt (C) -0.1 -0.5 +0.4 +0.3 -0.2
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.0 +0.1 +0.6 -1.3 +0.5
phage AgroPhage_A05 +0.0 -0.2 +0.5 -0.5 +0.1
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.2 -0.4 +0.5 +0.6 -0.1
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.2 +0.7 +0.1 -0.2 -0.4
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=1days -0.2 -0.2 +0.3 +0.5 +0.2
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.1 -0.3 +0.3 +0.4 +0.3
in planta Plant=Sorghum_NK_300; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.2 -0.0 +0.7 -0.3 +0.1
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.1 -0.2 +0.8 -0.2 +0.4
phage AgroPhage_D10 -0.0 +0.2 +0.5 +0.4 -0.3
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.4 +0.3 +0.6 +0.3 +0.0
no phage P2L5 +0.1 +0.7 +0.4 -0.3 +0.1
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=1days -0.1 +0.3 +0.4 +0.5 +0.1
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.2 +0.1 +0.6 +0.5 -0.1
phage AgroPhage_C10 +0.1 +0.0 +0.7 +0.4 +0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.4 +0.2 +0.5 +0.6 +0.0
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