Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu3439 and Atu3440 are separated by 19 nucleotidesAtu3440 and Atu3441 are separated by 16 nucleotidesAtu3441 and Atu3442 are separated by 55 nucleotidesAtu3442 and Atu3443 are separated by 42 nucleotides Atu3439: Atu3439 - acyl-CoA dehydrogenase, at 485,786 to 487,024 Atu3439 Atu3440: Atu3440 - LysR family transcriptional regulator, at 487,044 to 488,015 Atu3440 Atu3441: Atu3441 - nitrilotriacetate monooxygenase, at 488,032 to 489,384 Atu3441 Atu3442: Atu3442 - oligopeptide ABC transporter substrate-binding protein, at 489,440 to 491,035 Atu3442 Atu3443: Atu3443 - hypothetical protein, at 491,078 to 491,527 Atu3443
Group Condition Atu3439 Atu3440 Atu3441 Atu3442 Atu3443
Atjh14 -0.4 +0.2 -0.3 -0.0 -3.6
phage AgroPhage_D04 +0.1 -0.2 -0.1 +0.3 -3.2
phage AgroPhage_C04 +0.1 -0.5 -0.2 +0.2 -2.2
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.2 -0.1 -0.0 +0.3 -2.2
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.2 -0.2 -0.1 +0.3 -1.7
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.2 -0.4 +0.0 -0.1 -1.0
in planta Plant=Sorghum_X54_243; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.3 +0.1 -0.1 +0.4 -1.4
nophagecontrol No phage control -0.3 +0.1 +0.4 +0.1 -1.4
no phage P3L4 -0.1 +0.1 +0.0 -0.1 -1.0
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.3 -0.1 +0.4 -0.1 -1.6
stress R2A with tungstate 375 mM +0.3 -0.2 -0.2 -0.1 -0.9
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.2 +0.3 +0.1 -0.2 -0.9
Atjh2 +0.2 +0.0 +0.1 -0.1 -0.9
stress R2A with m-arsenite 0.8 mM +0.3 -0.1 +0.1 +0.2 -0.9
phage AgroPhage_D10 -0.4 -0.4 +0.2 -0.2 +0.5
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.6 +0.1 -0.0 -0.2 -0.7
in planta Plant=Wheat; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.2 +0.2 +0.3 -0.1 -0.6
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.2 -0.4 +0.1 -0.3 +0.5
stress R2A with Vancomycin 0.009 mM +0.5 -0.2 -0.2 +0.5 -0.5
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.3 +0.1 +0.3 +0.2 -0.8
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.2 +0.4 +0.2 -0.3 -0.3
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.2 -0.0 +0.3 -0.5 +0.7
in planta Plant=Wheat; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.2 -0.2 +0.2 -0.2 +0.8
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.2 +0.1 +0.4 +0.2 +0.6
in planta Plant=Lettuce; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.2 +0.3 -0.1 +0.1 +0.6
in planta Plant=Maize; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.5 +0.1 +0.4 +0.4 -0.2
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.4 +0.2 -0.1 -0.2 +0.7
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.0 +0.5 -0.1 +0.4 +0.3
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.3 -0.1 -0.1 +0.2 +1.4
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.2 +0.4 +0.5 +0.2 +1.0
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