Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu3438 and Atu3439 are separated by 67 nucleotidesAtu3439 and Atu3440 are separated by 19 nucleotidesAtu3440 and Atu3441 are separated by 16 nucleotidesAtu3441 and Atu3442 are separated by 55 nucleotides Atu3438: Atu3438 - oxidoreductase, at 484,663 to 485,718 Atu3438 Atu3439: Atu3439 - acyl-CoA dehydrogenase, at 485,786 to 487,024 Atu3439 Atu3440: Atu3440 - LysR family transcriptional regulator, at 487,044 to 488,015 Atu3440 Atu3441: Atu3441 - nitrilotriacetate monooxygenase, at 488,032 to 489,384 Atu3441 Atu3442: Atu3442 - oligopeptide ABC transporter substrate-binding protein, at 489,440 to 491,035 Atu3442
Group Condition Atu3438 Atu3439 Atu3440 Atu3441 Atu3442
carbon source Rhamnogalacturonan - from potato (C) -0.3 -0.4 -0.4 -0.1 +0.1
Atjh2 -0.3 -0.4 -0.1 -0.3 +0.3
phage AgroPhage_D07 -0.6 -0.3 -0.0 -0.0 +0.1
phage AgroPhage_D10 -0.1 -0.4 -0.4 +0.2 -0.2
Atjh2 -0.2 -0.2 -0.4 -0.3 +0.2
stress Chloramphenicol 12.5 ug/mL -0.6 -0.5 +0.1 +0.3 -0.1
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD2.0 -0.4 +0.2 -0.3 +0.1 -0.2
in planta Plant=Sorghum_Btx_642; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.6 +0.3 -0.0 -0.3 +0.1
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.4 +0.2 -0.0 +0.3 -0.5
phage AgroPhage_H04 -0.4 -0.2 -0.1 +0.2 +0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.2 +0.2 -0.4 +0.1 -0.3
Atjh14 +0.4 -0.4 +0.2 -0.3 -0.0
phage AgroPhage_B07 -0.3 -0.3 +0.1 +0.3 +0.3
in planta Plant=Wheat; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.4 +0.2 +0.2 +0.3 -0.1
in planta Plant=Sorghum_X50_665; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.3 -0.1 +0.3 +0.3 +0.2
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.5 -0.1 +0.1 +0.4 +0.4
in planta Plant=Sorghum_X54_243; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.3 -0.3 +0.1 -0.1 +0.4
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.1 +0.2 +0.4 +0.2 -0.3
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.4 +0.3 +0.1 +0.3 +0.2
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.2 +0.6 +0.1 -0.0 -0.2
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.2 +0.3 -0.1 +0.4 -0.1
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.3 +0.4 +0.2 -0.1 -0.2
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.1 +0.0 +0.5 -0.1 +0.4
stress R2A with Vancomycin 0.009 mM +0.1 +0.5 -0.2 -0.2 +0.5
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.0 -0.3 +0.4 +0.3 +0.3
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.3 -0.2 +0.1 +0.4 +0.2
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.3 -0.1 +0.3 +0.4 +0.0
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.2 -0.2 +0.4 +0.5 +0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.7 +0.2 +0.2 +0.0 +0.1
in planta Plant=Maize; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.1 +0.5 +0.1 +0.4 +0.4
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