Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu3417 and Atu3418 are separated by 13 nucleotidesAtu3418 and Atu3419 are separated by 23 nucleotidesAtu3419 and Atu3420 are separated by 83 nucleotidesAtu3420 and Atu3421 are separated by 23 nucleotides Atu3417: Atu3417 - ABC transporter permease, at 464,295 to 466,106 Atu3417 Atu3418: Atu3418 - acetyltransferase, at 466,120 to 466,665 Atu3418 Atu3419: Atu3419 - hippurate hydrolase, at 466,689 to 467,876 Atu3419 Atu3420: Atu3420 - monooxygenase, at 467,960 to 469,300 Atu3420 Atu3421: Atu3421 - hypothetical protein, at 469,324 to 470,325 Atu3421
Group Condition Atu3417 Atu3418 Atu3419 Atu3420 Atu3421
phage AgroPhage_E10 -0.2 -0.2 -0.5 -0.1 -0.3
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.5 -0.5 -0.3 +0.0 +0.1
phage AgroPhage_D10 -0.2 +0.1 -0.2 -0.3 -0.5
in planta Plant=Sorghum_X50_665; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.1 -0.3 +0.2 -0.3 -0.5
phage AgroPhage_E04 +0.1 +0.3 +0.0 -0.3 -0.7
nitrogen source DL-2-Aminobutyric (N) +0.4 +0.4 -0.3 -0.4 -0.6
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.2 -0.2 -0.4 +0.1 +0.3
stress R2A with m-arsenite 0.8 mM -0.1 -0.4 -0.3 -0.0 +0.5
in planta Plant=Sorghum_Btx_642; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.2 -0.4 +0.3 -0.3 -0.0
in planta Plant=Sorghum_SS_20; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.5 -0.3 +0.4 -0.6 -0.1
r2a_control R2A control +0.1 -0.2 +0.6 -0.0 -0.5
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.1 +0.2 +0.3 -0.5 +0.2
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.4 +0.2 +0.5 -0.5 +0.5
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.1 -0.2 +0.4 +0.6 -0.2
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.2 -0.1 +0.2 -0.3 +0.5
carbon source D-Saccharic potassium salt (C) -0.1 -0.2 +0.2 +0.3 +0.5
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.0 +0.4 +0.4 -0.6 +0.4
stress R2A with Vancomycin 0.009 mM +0.3 -0.1 +0.5 +0.3 -0.3
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.2 +0.2 -0.2 -0.1 +0.6
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.2 +0.4 +0.5 -0.1 -0.1
phage phage 95.1 +0.2 -0.0 -0.0 +1.0 -0.2
phage AgroPhage_C04 +0.4 -0.4 +0.1 +0.9 -0.1
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.2 +0.7 +0.0 +0.2 -0.2
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.2 +0.5 +0.0 -0.2 +0.6
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.0 +0.3 +1.1 -0.0 -0.2
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.1 -0.1 +0.9 +0.4 +0.2
phage Phage 95.3 + bacteria -0.1 +0.2 +0.3 +0.7 +0.4
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.0 +0.6 -0.4 +0.1 +1.1
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.3 +0.5 +0.4 -0.1 +0.6
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.7 +0.7 +0.3 -0.3 +0.6
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